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TMEM236 (transmembrane protein 236)

Identity

Alias (NCBI)FAM23A
FAM23B
bA162I21.2
bA16O1.2
HGNC (Hugo) TMEM236
HGNC Alias symbbA16O1.2
bA162I21.2
HGNC Previous nameFAM23B
 FAM23A
HGNC Previous namefamily with sequence similarity 23, member B
 family with sequence similarity 23, member A
LocusID (NCBI) 653567
Atlas_Id 74900
Location 10p12.33  [Link to chromosome band 10p12]
Location_base_pair Starts at 17752201 and ends at 17800867 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM236   23473
Cards
Entrez_Gene (NCBI)TMEM236    transmembrane protein 236
AliasesFAM23A; FAM23B; bA162I21.2; bA16O1.2
GeneCards (Weizmann)TMEM236
Ensembl hg19 (Hinxton)ENSG00000148483 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148483 [Gene_View]  ENSG00000148483 [Sequence]  chr10:17752201-17800867 [Contig_View]  TMEM236 [Vega]
ICGC DataPortalENSG00000148483
TCGA cBioPortalTMEM236
AceView (NCBI)TMEM236
Genatlas (Paris)TMEM236
SOURCE (Princeton)TMEM236
Genetics Home Reference (NIH)TMEM236
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM236  -     chr10:17752201-17800867 +  10p12.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM236  -     10p12.33   [Description]    (hg19-Feb_2009)
GoldenPathTMEM236 - 10p12.33 [CytoView hg19]  TMEM236 - 10p12.33 [CytoView hg38]
ImmunoBaseENSG00000148483
Genome Data Viewer NCBITMEM236 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK056775 AK300456 BC157856 BX097915
RefSeq transcript (Entrez)NM_001013629 NM_001098844
Consensus coding sequences : CCDS (NCBI)TMEM236
Gene ExpressionTMEM236 [ NCBI-GEO ]   TMEM236 [ EBI - ARRAY_EXPRESS ]   TMEM236 [ SEEK ]   TMEM236 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM236 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM236 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653567
GTEX Portal (Tissue expression)TMEM236
Human Protein AtlasENSG00000148483-TMEM236 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W0B7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W0B7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W0B7
PhosPhoSitePlusQ5W0B7
Domains : Interpro (EBI)Uncharacterised_FAM23-like_TM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM236
SuperfamilyQ5W0B7
AlphaFold pdb e-kbQ5W0B7   
Human Protein Atlas [tissue]ENSG00000148483-TMEM236 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5W0B7
IntAct (EBI)Q5W0B7
BioGRIDTMEM236
STRING (EMBL)TMEM236
ZODIACTMEM236
Ontologies - Pathways
QuickGOQ5W0B7
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM236
Atlas of Cancer Signalling NetworkTMEM236
Wikipedia pathwaysTMEM236
Orthology - Evolution
OrthoDB653567
GeneTree (enSembl)ENSG00000148483
Phylogenetic Trees/Animal Genes : TreeFamTMEM236
Homologs : HomoloGeneTMEM236
Homology/Alignments : Family Browser (UCSC)TMEM236
Gene fusions - Rearrangements
Fusion : QuiverTMEM236
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM236 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM236
dbVarTMEM236
ClinVarTMEM236
MonarchTMEM236
1000_GenomesTMEM236 
Exome Variant ServerTMEM236
GNOMAD BrowserENSG00000148483
Varsome BrowserTMEM236
ACMGTMEM236 variants
VarityQ5W0B7
Genomic Variants (DGV)TMEM236 [DGVbeta]
DECIPHERTMEM236 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM236 
Mutations
ICGC Data PortalTMEM236 
TCGA Data PortalTMEM236 
Broad Tumor PortalTMEM236
OASIS PortalTMEM236 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM236  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM236
Mutations and Diseases : HGMDTMEM236
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM236
DgiDB (Drug Gene Interaction Database)TMEM236
DoCM (Curated mutations)TMEM236
CIViC (Clinical Interpretations of Variants in Cancer)TMEM236
Cancer3DTMEM236
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM236
MedgenTMEM236
Genetic Testing Registry TMEM236
NextProtQ5W0B7 [Medical]
GENETestsTMEM236
Target ValidationTMEM236
Huge Navigator TMEM236 [HugePedia]
ClinGenTMEM236
Clinical trials, drugs, therapy
MyCancerGenomeTMEM236
Protein Interactions : CTDTMEM236
Pharm GKB GenePA134931867
PharosQ5W0B7
Clinical trialTMEM236
Miscellaneous
canSAR (ICR)TMEM236
HarmonizomeTMEM236
DataMed IndexTMEM236
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM236
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:05 CEST 2021

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