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TMEM236 (transmembrane protein 236)

Identity

Alias_namesFAM23B
FAM23A
family with sequence similarity 23, member B
family with sequence similarity 23, member A
Alias_symbol (synonym)bA16O1.2
bA162I21.2
Other alias
HGNC (Hugo) TMEM236
LocusID (NCBI) 653567
Atlas_Id 74900
Location 10p12.33  [Link to chromosome band 10p12]
Location_base_pair Starts at 17752261 and ends at 17800867 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM236   23473
Cards
Entrez_Gene (NCBI)TMEM236  653567  transmembrane protein 236
AliasesFAM23A; FAM23B; bA162I21.2; bA16O1.2
GeneCards (Weizmann)TMEM236
Ensembl hg19 (Hinxton)ENSG00000148483 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148483 [Gene_View]  chr10:17752261-17800867 [Contig_View]  TMEM236 [Vega]
ICGC DataPortalENSG00000148483
TCGA cBioPortalTMEM236
AceView (NCBI)TMEM236
Genatlas (Paris)TMEM236
WikiGenes653567
SOURCE (Princeton)TMEM236
Genetics Home Reference (NIH)TMEM236
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM236  -     chr10:17752261-17800867 +  10p12.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM236  -     10p12.33   [Description]    (hg19-Feb_2009)
EnsemblTMEM236 - 10p12.33 [CytoView hg19]  TMEM236 - 10p12.33 [CytoView hg38]
Mapping of homologs : NCBITMEM236 [Mapview hg19]  TMEM236 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056775 AK300456 BC157856 BX097915
RefSeq transcript (Entrez)NM_001013629 NM_001098844
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM236
Cluster EST : UnigeneHs.733272 [ NCBI ]
CGAP (NCI)Hs.733272
Alternative Splicing GalleryENSG00000148483
Gene ExpressionTMEM236 [ NCBI-GEO ]   TMEM236 [ EBI - ARRAY_EXPRESS ]   TMEM236 [ SEEK ]   TMEM236 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM236 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653567
GTEX Portal (Tissue expression)TMEM236
Human Protein AtlasENSG00000148483-TMEM236 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W0B7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W0B7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W0B7
Splice isoforms : SwissVarQ5W0B7
PhosPhoSitePlusQ5W0B7
Domains : Interpro (EBI)Uncharacterised_FAM23-like_TM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain structure : Prodom (Prabi Lyon)Uncharacterised_FAM23-like_TM (PD098445)   
Conserved Domain (NCBI)TMEM236
DMDM Disease mutations653567
Blocks (Seattle)TMEM236
SuperfamilyQ5W0B7
Human Protein Atlas [tissue]ENSG00000148483-TMEM236 [tissue]
Peptide AtlasQ5W0B7
IPIIPI00259858   IPI00910854   
Protein Interaction databases
DIP (DOE-UCLA)Q5W0B7
IntAct (EBI)Q5W0B7
FunCoupENSG00000148483
BioGRIDTMEM236
STRING (EMBL)TMEM236
ZODIACTMEM236
Ontologies - Pathways
QuickGOQ5W0B7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM236
Atlas of Cancer Signalling NetworkTMEM236
Wikipedia pathwaysTMEM236
Orthology - Evolution
OrthoDB653567
GeneTree (enSembl)ENSG00000148483
Phylogenetic Trees/Animal Genes : TreeFamTMEM236
HOVERGENQ5W0B7
HOGENOMQ5W0B7
Homologs : HomoloGeneTMEM236
Homology/Alignments : Family Browser (UCSC)TMEM236
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM236
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM236 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM236
dbVarTMEM236
ClinVarTMEM236
1000_GenomesTMEM236 
Exome Variant ServerTMEM236
ExAC (Exome Aggregation Consortium)ENSG00000148483
GNOMAD BrowserENSG00000148483
Genetic variants : HAPMAP653567
Genomic Variants (DGV)TMEM236 [DGVbeta]
DECIPHERTMEM236 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM236 
Mutations
ICGC Data PortalTMEM236 
TCGA Data PortalTMEM236 
Broad Tumor PortalTMEM236
OASIS PortalTMEM236 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM236  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM236
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM236
DgiDB (Drug Gene Interaction Database)TMEM236
DoCM (Curated mutations)TMEM236 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM236 (select a term)
intoGenTMEM236
Cancer3DTMEM236(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM236
MedgenTMEM236
Genetic Testing Registry TMEM236
NextProtQ5W0B7 [Medical]
TSGene653567
GENETestsTMEM236
Target ValidationTMEM236
Huge Navigator TMEM236 [HugePedia]
snp3D : Map Gene to Disease653567
BioCentury BCIQTMEM236
ClinGenTMEM236
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653567
Chemical/Pharm GKB GenePA134931867
Clinical trialTMEM236
Miscellaneous
canSAR (ICR)TMEM236 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM236
EVEXTMEM236
GoPubMedTMEM236
iHOPTMEM236
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:22:43 CET 2017

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