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TMEM239 (transmembrane protein 239)

Identity

Other alias-
HGNC (Hugo) TMEM239
LocusID (NCBI) 100288797
Atlas_Id 74903
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2796976 and ends at 2797804 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM239   40044
Cards
Entrez_Gene (NCBI)TMEM239  100288797  transmembrane protein 239
Aliases
GeneCards (Weizmann)TMEM239
Ensembl hg19 (Hinxton)ENSG00000198326 [Gene_View]  chr20:2796976-2797804 [Contig_View]  TMEM239 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198326 [Gene_View]  chr20:2796976-2797804 [Contig_View]  TMEM239 [Vega]
ICGC DataPortalENSG00000198326
TCGA cBioPortalTMEM239
AceView (NCBI)TMEM239
Genatlas (Paris)TMEM239
WikiGenes100288797
SOURCE (Princeton)TMEM239
Genetics Home Reference (NIH)TMEM239
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM239  -     chr20:2796976-2797804 +  20p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM239  -     20p13   [Description]    (hg38-Dec_2013)
EnsemblTMEM239 - 20p13 [CytoView hg19]  TMEM239 - 20p13 [CytoView hg38]
Mapping of homologs : NCBITMEM239 [Mapview hg19]  TMEM239 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126033 BC021178
RefSeq transcript (Entrez)NM_001167670
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)TMEM239
Cluster EST : UnigeneHs.664180 [ NCBI ]
CGAP (NCI)Hs.664180
Alternative Splicing GalleryENSG00000198326
Gene ExpressionTMEM239 [ NCBI-GEO ]   TMEM239 [ EBI - ARRAY_EXPRESS ]   TMEM239 [ SEEK ]   TMEM239 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM239 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288797
GTEX Portal (Tissue expression)TMEM239
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW34
Splice isoforms : SwissVarQ8WW34
PhosPhoSitePlusQ8WW34
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM239
DMDM Disease mutations100288797
Blocks (Seattle)TMEM239
SuperfamilyQ8WW34
Human Protein AtlasENSG00000198326
Peptide AtlasQ8WW34
IPIIPI00455158   IPI00844428   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW34
IntAct (EBI)Q8WW34
FunCoupENSG00000198326
BioGRIDTMEM239
STRING (EMBL)TMEM239
ZODIACTMEM239
Ontologies - Pathways
QuickGOQ8WW34
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM239
Atlas of Cancer Signalling NetworkTMEM239
Wikipedia pathwaysTMEM239
Orthology - Evolution
OrthoDB100288797
GeneTree (enSembl)ENSG00000198326
Phylogenetic Trees/Animal Genes : TreeFamTMEM239
HOVERGENQ8WW34
HOGENOMQ8WW34
Homologs : HomoloGeneTMEM239
Homology/Alignments : Family Browser (UCSC)TMEM239
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM239 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM239
dbVarTMEM239
ClinVarTMEM239
1000_GenomesTMEM239 
Exome Variant ServerTMEM239
ExAC (Exome Aggregation Consortium)TMEM239 (select the gene name)
Genetic variants : HAPMAP100288797
Genomic Variants (DGV)TMEM239 [DGVbeta]
DECIPHER (Syndromes)20:2796976-2797804  ENSG00000198326
CONAN: Copy Number AnalysisTMEM239 
Mutations
ICGC Data PortalTMEM239 
TCGA Data PortalTMEM239 
Broad Tumor PortalTMEM239
OASIS PortalTMEM239 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM239  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM239
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM239
DgiDB (Drug Gene Interaction Database)TMEM239
DoCM (Curated mutations)TMEM239 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM239 (select a term)
intoGenTMEM239
Cancer3DTMEM239(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM239
Genetic Testing Registry TMEM239
NextProtQ8WW34 [Medical]
TSGene100288797
GENETestsTMEM239
Huge Navigator TMEM239 [HugePedia]
snp3D : Map Gene to Disease100288797
BioCentury BCIQTMEM239
ClinGenTMEM239
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288797
Clinical trialTMEM239
Miscellaneous
canSAR (ICR)TMEM239 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM239
EVEXTMEM239
GoPubMedTMEM239
iHOPTMEM239
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:48:47 CET 2017

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