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TMEM239 (transmembrane protein 239)

Identity

Other alias-
HGNC (Hugo) TMEM239
LocusID (NCBI) 100288797
Atlas_Id 74903
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2816302 and ends at 2818060 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM239   40044
Cards
Entrez_Gene (NCBI)TMEM239  100288797  transmembrane protein 239
Aliases
GeneCards (Weizmann)TMEM239
Ensembl hg19 (Hinxton)ENSG00000198326 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198326 [Gene_View]  chr20:2816302-2818060 [Contig_View]  TMEM239 [Vega]
ICGC DataPortalENSG00000198326
TCGA cBioPortalTMEM239
AceView (NCBI)TMEM239
Genatlas (Paris)TMEM239
WikiGenes100288797
SOURCE (Princeton)TMEM239
Genetics Home Reference (NIH)TMEM239
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM239  -     chr20:2816302-2818060 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM239  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblTMEM239 - 20p13 [CytoView hg19]  TMEM239 - 20p13 [CytoView hg38]
Mapping of homologs : NCBITMEM239 [Mapview hg19]  TMEM239 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI383461 AK126033 BC021178 DB337508
RefSeq transcript (Entrez)NM_001167670 NM_001318207
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM239
Cluster EST : UnigeneHs.664180 [ NCBI ]
CGAP (NCI)Hs.664180
Alternative Splicing GalleryENSG00000198326
Gene ExpressionTMEM239 [ NCBI-GEO ]   TMEM239 [ EBI - ARRAY_EXPRESS ]   TMEM239 [ SEEK ]   TMEM239 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM239 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288797
GTEX Portal (Tissue expression)TMEM239
Human Protein AtlasENSG00000198326-TMEM239 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW34
Splice isoforms : SwissVarQ8WW34
PhosPhoSitePlusQ8WW34
Domains : Interpro (EBI)TMEM239   
Domain families : Pfam (Sanger)TMEM239 (PF15841)   
Domain families : Pfam (NCBI)pfam15841   
Conserved Domain (NCBI)TMEM239
DMDM Disease mutations100288797
Blocks (Seattle)TMEM239
SuperfamilyQ8WW34
Human Protein Atlas [tissue]ENSG00000198326-TMEM239 [tissue]
Peptide AtlasQ8WW34
IPIIPI00455158   IPI00844428   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW34
IntAct (EBI)Q8WW34
FunCoupENSG00000198326
BioGRIDTMEM239
STRING (EMBL)TMEM239
ZODIACTMEM239
Ontologies - Pathways
QuickGOQ8WW34
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM239
Atlas of Cancer Signalling NetworkTMEM239
Wikipedia pathwaysTMEM239
Orthology - Evolution
OrthoDB100288797
GeneTree (enSembl)ENSG00000198326
Phylogenetic Trees/Animal Genes : TreeFamTMEM239
HOVERGENQ8WW34
HOGENOMQ8WW34
Homologs : HomoloGeneTMEM239
Homology/Alignments : Family Browser (UCSC)TMEM239
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM239
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM239 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM239
dbVarTMEM239
ClinVarTMEM239
1000_GenomesTMEM239 
Exome Variant ServerTMEM239
ExAC (Exome Aggregation Consortium)ENSG00000198326
GNOMAD BrowserENSG00000198326
Genetic variants : HAPMAP100288797
Genomic Variants (DGV)TMEM239 [DGVbeta]
DECIPHERTMEM239 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM239 
Mutations
ICGC Data PortalTMEM239 
TCGA Data PortalTMEM239 
Broad Tumor PortalTMEM239
OASIS PortalTMEM239 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM239  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM239
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM239
DgiDB (Drug Gene Interaction Database)TMEM239
DoCM (Curated mutations)TMEM239 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM239 (select a term)
intoGenTMEM239
Cancer3DTMEM239(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM239
MedgenTMEM239
Genetic Testing Registry TMEM239
NextProtQ8WW34 [Medical]
TSGene100288797
GENETestsTMEM239
Target ValidationTMEM239
Huge Navigator TMEM239 [HugePedia]
snp3D : Map Gene to Disease100288797
BioCentury BCIQTMEM239
ClinGenTMEM239
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288797
Chemical/Pharm GKB GenePA166049063
Clinical trialTMEM239
Miscellaneous
canSAR (ICR)TMEM239 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM239
EVEXTMEM239
GoPubMedTMEM239
iHOPTMEM239
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:18:48 CET 2017

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