Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMEM240 (transmembrane protein 240)

Identity

Alias_namesC1orf70
SCA21
chromosome 1 open reading frame 70
spinocerebellar ataxia 21
Other alias
HGNC (Hugo) TMEM240
LocusID (NCBI) 339453
Atlas_Id 74904
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1534778 and ends at 1540360 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM240   25186
Cards
Entrez_Gene (NCBI)TMEM240  339453  transmembrane protein 240
AliasesC1orf70; SCA21
GeneCards (Weizmann)TMEM240
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:1534778-1540360 [Contig_View]  TMEM240 [Vega]
TCGA cBioPortalTMEM240
AceView (NCBI)TMEM240
Genatlas (Paris)TMEM240
WikiGenes339453
SOURCE (Princeton)TMEM240
Genetics Home Reference (NIH)TMEM240
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM240  -     chr1:1534778-1540360 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM240  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblTMEM240 - 1p36.33 [CytoView hg19]  TMEM240 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBITMEM240 [Mapview hg19]  TMEM240 [Mapview hg38]
OMIM607454   616101   
Gene and transcription
Genbank (Entrez)BC147018 BC147020 BF446167 BU929336 EG328560
RefSeq transcript (Entrez)NM_001114748
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM240
Cluster EST : UnigeneHs.668654 [ NCBI ]
CGAP (NCI)Hs.668654
Gene ExpressionTMEM240 [ NCBI-GEO ]   TMEM240 [ EBI - ARRAY_EXPRESS ]   TMEM240 [ SEEK ]   TMEM240 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM240 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339453
GTEX Portal (Tissue expression)TMEM240
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SV17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SV17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SV17
Splice isoforms : SwissVarQ5SV17
PhosPhoSitePlusQ5SV17
Domains : Interpro (EBI)TMEM240   
Domain families : Pfam (Sanger)TMEM240 (PF15207)   
Domain families : Pfam (NCBI)pfam15207   
Conserved Domain (NCBI)TMEM240
DMDM Disease mutations339453
Blocks (Seattle)TMEM240
SuperfamilyQ5SV17
Peptide AtlasQ5SV17
IPIIPI00884888   
Protein Interaction databases
DIP (DOE-UCLA)Q5SV17
IntAct (EBI)Q5SV17
BioGRIDTMEM240
STRING (EMBL)TMEM240
ZODIACTMEM240
Ontologies - Pathways
QuickGOQ5SV17
Ontology : AmiGOintegral component of membrane  cell junction  synaptic membrane  
Ontology : EGO-EBIintegral component of membrane  cell junction  synaptic membrane  
NDEx NetworkTMEM240
Atlas of Cancer Signalling NetworkTMEM240
Wikipedia pathwaysTMEM240
Orthology - Evolution
OrthoDB339453
Phylogenetic Trees/Animal Genes : TreeFamTMEM240
HOVERGENQ5SV17
HOGENOMQ5SV17
Homologs : HomoloGeneTMEM240
Homology/Alignments : Family Browser (UCSC)TMEM240
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM240 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM240
dbVarTMEM240
ClinVarTMEM240
1000_GenomesTMEM240 
Exome Variant ServerTMEM240
ExAC (Exome Aggregation Consortium)TMEM240 (select the gene name)
Genetic variants : HAPMAP339453
Genomic Variants (DGV)TMEM240 [DGVbeta]
DECIPHERTMEM240 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM240 
Mutations
ICGC Data PortalTMEM240 
TCGA Data PortalTMEM240 
Broad Tumor PortalTMEM240
OASIS PortalTMEM240 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM240  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM240
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM240
DgiDB (Drug Gene Interaction Database)TMEM240
DoCM (Curated mutations)TMEM240 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM240 (select a term)
intoGenTMEM240
Cancer3DTMEM240(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607454    616101   
Orphanet13790   
MedgenTMEM240
Genetic Testing Registry TMEM240
NextProtQ5SV17 [Medical]
TSGene339453
GENETestsTMEM240
Target ValidationTMEM240
Huge Navigator TMEM240 [HugePedia]
snp3D : Map Gene to Disease339453
BioCentury BCIQTMEM240
ClinGenTMEM240
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339453
Chemical/Pharm GKB GenePA142672520
Clinical trialTMEM240
Miscellaneous
canSAR (ICR)TMEM240 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM240
EVEXTMEM240
GoPubMedTMEM240
iHOPTMEM240
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:54 CEST 2017

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