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TMEM241 (transmembrane protein 241)

Identity

Alias_namesC18orf45
chromosome 18 open reading frame 45
Alias_symbol (synonym)MGC11386
FLJ44259
Other aliashVVT
HGNC (Hugo) TMEM241
LocusID (NCBI) 85019
Atlas_Id 54711
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 23296015 and ends at 23437969 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIGQ (16p13.3) / TMEM241 (18q11.2)TMEM241 (18q11.2) / HM13 (20q11.21)TMEM241 (18q11.2) / SNX29 (16p13.13)
TMEM241 (18q11.2) / TMED4 (7p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM241   31723
Cards
Entrez_Gene (NCBI)TMEM241  85019  transmembrane protein 241
AliasesC18orf45; hVVT
GeneCards (Weizmann)TMEM241
Ensembl hg19 (Hinxton)ENSG00000134490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134490 [Gene_View]  chr18:23296015-23437969 [Contig_View]  TMEM241 [Vega]
ICGC DataPortalENSG00000134490
TCGA cBioPortalTMEM241
AceView (NCBI)TMEM241
Genatlas (Paris)TMEM241
WikiGenes85019
SOURCE (Princeton)TMEM241
Genetics Home Reference (NIH)TMEM241
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM241  -     chr18:23296015-23437969 -  18q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM241  -     18q11.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM241 - 18q11.2 [CytoView hg19]  TMEM241 - 18q11.2 [CytoView hg38]
Mapping of homologs : NCBITMEM241 [Mapview hg19]  TMEM241 [Mapview hg38]
OMIM615430   
Gene and transcription
Genbank (Entrez)AB253738 AB253739 AK123623 AK126247 AK294916
RefSeq transcript (Entrez)NM_001318834 NM_032933
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM241
Cluster EST : UnigeneHs.137562 [ NCBI ]
CGAP (NCI)Hs.137562
Alternative Splicing GalleryENSG00000134490
Gene ExpressionTMEM241 [ NCBI-GEO ]   TMEM241 [ EBI - ARRAY_EXPRESS ]   TMEM241 [ SEEK ]   TMEM241 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM241 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85019
GTEX Portal (Tissue expression)TMEM241
Human Protein AtlasENSG00000134490-TMEM241 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ24JQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ24JQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ24JQ0
Splice isoforms : SwissVarQ24JQ0
PhosPhoSitePlusQ24JQ0
Domains : Interpro (EBI)GDP-fucose_transp   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM241
DMDM Disease mutations85019
Blocks (Seattle)TMEM241
SuperfamilyQ24JQ0
Human Protein Atlas [tissue]ENSG00000134490-TMEM241 [tissue]
Peptide AtlasQ24JQ0
HPRD12692
IPIIPI00798293   IPI00868802   IPI00446436   IPI01009546   IPI01015496   IPI00980372   IPI00979719   IPI00980727   
Protein Interaction databases
DIP (DOE-UCLA)Q24JQ0
IntAct (EBI)Q24JQ0
FunCoupENSG00000134490
BioGRIDTMEM241
STRING (EMBL)TMEM241
ZODIACTMEM241
Ontologies - Pathways
QuickGOQ24JQ0
Ontology : AmiGOGDP-fucose transmembrane transporter activity  Golgi apparatus  integral component of membrane  GDP-fucose import into Golgi lumen  
Ontology : EGO-EBIGDP-fucose transmembrane transporter activity  Golgi apparatus  integral component of membrane  GDP-fucose import into Golgi lumen  
NDEx NetworkTMEM241
Atlas of Cancer Signalling NetworkTMEM241
Wikipedia pathwaysTMEM241
Orthology - Evolution
OrthoDB85019
GeneTree (enSembl)ENSG00000134490
Phylogenetic Trees/Animal Genes : TreeFamTMEM241
HOVERGENQ24JQ0
HOGENOMQ24JQ0
Homologs : HomoloGeneTMEM241
Homology/Alignments : Family Browser (UCSC)TMEM241
Gene fusions - Rearrangements
Fusion : MitelmanTMEM241/HM13 [18q11.2/20q11.21]  
Fusion : MitelmanTMEM241/SNX29 [18q11.2/16p13.13]  [t(16;18)(p13;q11)]  
Tumor Fusion PortalTMEM241
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM241 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM241
dbVarTMEM241
ClinVarTMEM241
1000_GenomesTMEM241 
Exome Variant ServerTMEM241
ExAC (Exome Aggregation Consortium)ENSG00000134490
GNOMAD BrowserENSG00000134490
Genetic variants : HAPMAP85019
Genomic Variants (DGV)TMEM241 [DGVbeta]
DECIPHERTMEM241 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM241 
Mutations
ICGC Data PortalTMEM241 
TCGA Data PortalTMEM241 
Broad Tumor PortalTMEM241
OASIS PortalTMEM241 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM241  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM241
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM241
DgiDB (Drug Gene Interaction Database)TMEM241
DoCM (Curated mutations)TMEM241 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM241 (select a term)
intoGenTMEM241
Cancer3DTMEM241(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615430   
Orphanet
DisGeNETTMEM241
MedgenTMEM241
Genetic Testing Registry TMEM241
NextProtQ24JQ0 [Medical]
TSGene85019
GENETestsTMEM241
Target ValidationTMEM241
Huge Navigator TMEM241 [HugePedia]
snp3D : Map Gene to Disease85019
BioCentury BCIQTMEM241
ClinGenTMEM241
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85019
Chemical/Pharm GKB GenePA134952915
Clinical trialTMEM241
Miscellaneous
canSAR (ICR)TMEM241 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM241
EVEXTMEM241
GoPubMedTMEM241
iHOPTMEM241
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:38:49 CET 2017

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