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TMEM242 (transmembrane protein 242)

Identity

Alias_namesC6orf35
chromosome 6 open reading frame 35
Alias_symbol (synonym)BM033
Other alias
HGNC (Hugo) TMEM242
LocusID (NCBI) 729515
Atlas_Id 74905
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 157289022 and ends at 157324259 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARID1B (6q25.3) / TMEM242 (6q25.3)TMEM242 (6q25.3) / ARID1B (6q25.3)TMEM242 (6q25.3) / KDM1B (6p22.3)
TMEM242 (6q25.3) / PREP (6q21)ZDHHC14 (6q25.3) / TMEM242 (6q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]
  t(6;6)(q21;q25) TMEM242/PREP
t(6;6)(q25;q25) ARID1B/TMEM242
t(6;6)(q25;q25) TMEM242/ARID1B
t(6;6)(q25;q25) ZDHHC14/TMEM242


External links

Nomenclature
HGNC (Hugo)TMEM242   17206
Cards
Entrez_Gene (NCBI)TMEM242  729515  transmembrane protein 242
AliasesBM033; C6orf35
GeneCards (Weizmann)TMEM242
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:157289022-157324259 [Contig_View]  TMEM242 [Vega]
TCGA cBioPortalTMEM242
AceView (NCBI)TMEM242
Genatlas (Paris)TMEM242
WikiGenes729515
SOURCE (Princeton)TMEM242
Genetics Home Reference (NIH)TMEM242
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM242  -     chr6:157289022-157324259 -  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM242  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM242 - 6q25.3 [CytoView hg19]  TMEM242 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBITMEM242 [Mapview hg19]  TMEM242 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA704900 AF161405 AF217510 AI803082 AK000891
RefSeq transcript (Entrez)NM_018452
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM242
Cluster EST : UnigeneHs.157212 [ NCBI ]
CGAP (NCI)Hs.157212
Gene ExpressionTMEM242 [ NCBI-GEO ]   TMEM242 [ EBI - ARRAY_EXPRESS ]   TMEM242 [ SEEK ]   TMEM242 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM242 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729515
GTEX Portal (Tissue expression)TMEM242
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWH2
Splice isoforms : SwissVarQ9NWH2
PhosPhoSitePlusQ9NWH2
Domains : Interpro (EBI)TMEM242   
Domain families : Pfam (Sanger)DUF1358 (PF07096)   
Domain families : Pfam (NCBI)pfam07096   
Conserved Domain (NCBI)TMEM242
DMDM Disease mutations729515
Blocks (Seattle)TMEM242
SuperfamilyQ9NWH2
Peptide AtlasQ9NWH2
IPIIPI00000334   IPI00514442   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWH2
IntAct (EBI)Q9NWH2
BioGRIDTMEM242
STRING (EMBL)TMEM242
ZODIACTMEM242
Ontologies - Pathways
QuickGOQ9NWH2
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM242
Atlas of Cancer Signalling NetworkTMEM242
Wikipedia pathwaysTMEM242
Orthology - Evolution
OrthoDB729515
Phylogenetic Trees/Animal Genes : TreeFamTMEM242
HOVERGENQ9NWH2
HOGENOMQ9NWH2
Homologs : HomoloGeneTMEM242
Homology/Alignments : Family Browser (UCSC)TMEM242
Gene fusions - Rearrangements
Fusion : QuiverTMEM242
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM242 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM242
dbVarTMEM242
ClinVarTMEM242
1000_GenomesTMEM242 
Exome Variant ServerTMEM242
Varsome BrowserTMEM242
Genetic variants : HAPMAP729515
Genomic Variants (DGV)TMEM242 [DGVbeta]
DECIPHERTMEM242 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM242 
Mutations
ICGC Data PortalTMEM242 
TCGA Data PortalTMEM242 
Broad Tumor PortalTMEM242
OASIS PortalTMEM242 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM242  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM242
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM242
DgiDB (Drug Gene Interaction Database)TMEM242
DoCM (Curated mutations)TMEM242 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM242 (select a term)
intoGenTMEM242
Cancer3DTMEM242(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM242
MedgenTMEM242
Genetic Testing Registry TMEM242
NextProtQ9NWH2 [Medical]
TSGene729515
GENETestsTMEM242
Target ValidationTMEM242
Huge Navigator TMEM242 [HugePedia]
snp3D : Map Gene to Disease729515
BioCentury BCIQTMEM242
ClinGenTMEM242
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729515
Chemical/Pharm GKB GenePA25936
Clinical trialTMEM242
Miscellaneous
canSAR (ICR)TMEM242 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM242
EVEXTMEM242
GoPubMedTMEM242
iHOPTMEM242
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:35:37 CEST 2018

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