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TMEM245 (transmembrane protein 245)

Identity

Alias_namesC9orf5
chromosome 9 open reading frame 5
Alias_symbol (synonym)CG-2
Other aliasCG2
HGNC (Hugo) TMEM245
LocusID (NCBI) 23731
Atlas_Id 74908
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 109015135 and ends at 109119945 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PDIA3P1 (1q21.1) / TMEM245 (9q31.3)TMEM245 (9q31.3) / FKBP15 (9q32)TMEM245 (9q31.3) / FRRS1L (9q31.3)
TMEM245 (9q31.3) / GOLM1 (9q21.33)TMEM245 (9q31.3) / KMT2C (7q36.1)TMEM245 (9q31.3) / TMEM245 (9q31.3)
TRPC4AP (20q11.22) / TMEM245 (9q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM245   1363
Cards
Entrez_Gene (NCBI)TMEM245  23731  transmembrane protein 245
AliasesC9orf5; CG-2; CG2
GeneCards (Weizmann)TMEM245
Ensembl hg19 (Hinxton)ENSG00000106771 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106771 [Gene_View]  chr9:109015135-109119945 [Contig_View]  TMEM245 [Vega]
ICGC DataPortalENSG00000106771
TCGA cBioPortalTMEM245
AceView (NCBI)TMEM245
Genatlas (Paris)TMEM245
WikiGenes23731
SOURCE (Princeton)TMEM245
Genetics Home Reference (NIH)TMEM245
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM245  -     chr9:109015135-109119945 -  9q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM245  -     9q31.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM245 - 9q31.3 [CytoView hg19]  TMEM245 - 9q31.3 [CytoView hg38]
Mapping of homologs : NCBITMEM245 [Mapview hg19]  TMEM245 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA465408 AF086175 AF153415 AK074248 AK090543
RefSeq transcript (Entrez)NM_001099734 NM_032012
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM245
Cluster EST : UnigeneHs.621479 [ NCBI ]
CGAP (NCI)Hs.621479
Alternative Splicing GalleryENSG00000106771
Gene ExpressionTMEM245 [ NCBI-GEO ]   TMEM245 [ EBI - ARRAY_EXPRESS ]   TMEM245 [ SEEK ]   TMEM245 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM245 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23731
GTEX Portal (Tissue expression)TMEM245
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H330   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H330  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H330
Splice isoforms : SwissVarQ9H330
PhosPhoSitePlusQ9H330
Domains : Interpro (EBI)AI-2E-like   
Domain families : Pfam (Sanger)AI-2E_transport (PF01594)   
Domain families : Pfam (NCBI)pfam01594   
Conserved Domain (NCBI)TMEM245
DMDM Disease mutations23731
Blocks (Seattle)TMEM245
SuperfamilyQ9H330
Human Protein AtlasENSG00000106771
Peptide AtlasQ9H330
HPRD09866
IPIIPI00607576   IPI01018849   IPI00945163   IPI00607692   IPI00012429   
Protein Interaction databases
DIP (DOE-UCLA)Q9H330
IntAct (EBI)Q9H330
FunCoupENSG00000106771
BioGRIDTMEM245
STRING (EMBL)TMEM245
ZODIACTMEM245
Ontologies - Pathways
QuickGOQ9H330
Ontology : AmiGOmolecular_function  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  biological_process  integral component of membrane  
NDEx NetworkTMEM245
Atlas of Cancer Signalling NetworkTMEM245
Wikipedia pathwaysTMEM245
Orthology - Evolution
OrthoDB23731
GeneTree (enSembl)ENSG00000106771
Phylogenetic Trees/Animal Genes : TreeFamTMEM245
HOVERGENQ9H330
HOGENOMQ9H330
Homologs : HomoloGeneTMEM245
Homology/Alignments : Family Browser (UCSC)TMEM245
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM245 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM245
dbVarTMEM245
ClinVarTMEM245
1000_GenomesTMEM245 
Exome Variant ServerTMEM245
ExAC (Exome Aggregation Consortium)TMEM245 (select the gene name)
Genetic variants : HAPMAP23731
Genomic Variants (DGV)TMEM245 [DGVbeta]
DECIPHERTMEM245 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM245 
Mutations
ICGC Data PortalTMEM245 
TCGA Data PortalTMEM245 
Broad Tumor PortalTMEM245
OASIS PortalTMEM245 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM245
BioMutasearch TMEM245
DgiDB (Drug Gene Interaction Database)TMEM245
DoCM (Curated mutations)TMEM245 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM245 (select a term)
intoGenTMEM245
Cancer3DTMEM245(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM245
Genetic Testing Registry TMEM245
NextProtQ9H330 [Medical]
TSGene23731
GENETestsTMEM245
Target ValidationTMEM245
Huge Navigator TMEM245 [HugePedia]
snp3D : Map Gene to Disease23731
BioCentury BCIQTMEM245
ClinGenTMEM245
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23731
Chemical/Pharm GKB GenePA25980
Clinical trialTMEM245
Miscellaneous
canSAR (ICR)TMEM245 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM245
EVEXTMEM245
GoPubMedTMEM245
iHOPTMEM245
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:55 CEST 2017

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