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TMEM247 (transmembrane protein 247)

Identity

Other alias-
HGNC (Hugo) TMEM247
LocusID (NCBI) 388946
Atlas_Id 74911
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 46479565 and ends at 46484425 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM247   42967
Cards
Entrez_Gene (NCBI)TMEM247  388946  transmembrane protein 247
Aliases
GeneCards (Weizmann)TMEM247
Ensembl hg19 (Hinxton)ENSG00000187600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187600 [Gene_View]  chr2:46479565-46484425 [Contig_View]  TMEM247 [Vega]
ICGC DataPortalENSG00000187600
TCGA cBioPortalTMEM247
AceView (NCBI)TMEM247
Genatlas (Paris)TMEM247
WikiGenes388946
SOURCE (Princeton)TMEM247
Genetics Home Reference (NIH)TMEM247
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM247  -     chr2:46479565-46484425 +  2p21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM247  -     2p21   [Description]    (hg19-Feb_2009)
EnsemblTMEM247 - 2p21 [CytoView hg19]  TMEM247 - 2p21 [CytoView hg38]
Mapping of homologs : NCBITMEM247 [Mapview hg19]  TMEM247 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA431175 AA432195
RefSeq transcript (Entrez)NM_001145051
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM247
Cluster EST : UnigeneHs.733348 [ NCBI ]
CGAP (NCI)Hs.733348
Alternative Splicing GalleryENSG00000187600
Gene ExpressionTMEM247 [ NCBI-GEO ]   TMEM247 [ EBI - ARRAY_EXPRESS ]   TMEM247 [ SEEK ]   TMEM247 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM247 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388946
GTEX Portal (Tissue expression)TMEM247
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NEH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NEH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NEH6
Splice isoforms : SwissVarA6NEH6
PhosPhoSitePlusA6NEH6
Domains : Interpro (EBI)TMEM247   
Domain families : Pfam (Sanger)TMEM247 (PF15444)   
Domain families : Pfam (NCBI)pfam15444   
Conserved Domain (NCBI)TMEM247
DMDM Disease mutations388946
Blocks (Seattle)TMEM247
SuperfamilyA6NEH6
Human Protein AtlasENSG00000187600
Peptide AtlasA6NEH6
IPIIPI00921285   
Protein Interaction databases
DIP (DOE-UCLA)A6NEH6
IntAct (EBI)A6NEH6
FunCoupENSG00000187600
BioGRIDTMEM247
STRING (EMBL)TMEM247
ZODIACTMEM247
Ontologies - Pathways
QuickGOA6NEH6
Ontology : AmiGOendoplasmic reticulum  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum  integral component of membrane  
NDEx NetworkTMEM247
Atlas of Cancer Signalling NetworkTMEM247
Wikipedia pathwaysTMEM247
Orthology - Evolution
OrthoDB388946
GeneTree (enSembl)ENSG00000187600
Phylogenetic Trees/Animal Genes : TreeFamTMEM247
HOVERGENA6NEH6
HOGENOMA6NEH6
Homologs : HomoloGeneTMEM247
Homology/Alignments : Family Browser (UCSC)TMEM247
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM247 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM247
dbVarTMEM247
ClinVarTMEM247
1000_GenomesTMEM247 
Exome Variant ServerTMEM247
ExAC (Exome Aggregation Consortium)TMEM247 (select the gene name)
Genetic variants : HAPMAP388946
Genomic Variants (DGV)TMEM247 [DGVbeta]
DECIPHERTMEM247 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM247 
Mutations
ICGC Data PortalTMEM247 
TCGA Data PortalTMEM247 
Broad Tumor PortalTMEM247
OASIS PortalTMEM247 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM247
BioMutasearch TMEM247
DgiDB (Drug Gene Interaction Database)TMEM247
DoCM (Curated mutations)TMEM247 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM247 (select a term)
intoGenTMEM247
Cancer3DTMEM247(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM247
Genetic Testing Registry TMEM247
NextProtA6NEH6 [Medical]
TSGene388946
GENETestsTMEM247
Target ValidationTMEM247
Huge Navigator TMEM247 [HugePedia]
snp3D : Map Gene to Disease388946
BioCentury BCIQTMEM247
ClinGenTMEM247
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388946
Chemical/Pharm GKB GenePA166049093
Clinical trialTMEM247
Miscellaneous
canSAR (ICR)TMEM247 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM247
EVEXTMEM247
GoPubMedTMEM247
iHOPTMEM247
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:55 CEST 2017

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