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TMEM249 (transmembrane protein 249)

Identity

Alias_symbol (synonym)C8orfK29
Other aliasC8ORFK29
HGNC (Hugo) TMEM249
LocusID (NCBI) 340393
Atlas_Id 74913
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144353226 and ends at 144354931 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM249   44155
Cards
Entrez_Gene (NCBI)TMEM249  340393  transmembrane protein 249
AliasesC8ORFK29
GeneCards (Weizmann)TMEM249
Ensembl hg19 (Hinxton)ENSG00000261587 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261587 [Gene_View]  chr8:144353226-144354931 [Contig_View]  TMEM249 [Vega]
ICGC DataPortalENSG00000261587
TCGA cBioPortalTMEM249
AceView (NCBI)TMEM249
Genatlas (Paris)TMEM249
WikiGenes340393
SOURCE (Princeton)TMEM249
Genetics Home Reference (NIH)TMEM249
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM249  -     chr8:144353226-144354931 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM249  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM249 - 8q24.3 [CytoView hg19]  TMEM249 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBITMEM249 [Mapview hg19]  TMEM249 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA781425 AB196634 AI478864 BC127763 BC127764
RefSeq transcript (Entrez)NM_001252402 NM_001252404 NM_001280561
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM249
Cluster EST : UnigeneHs.122231 [ NCBI ]
CGAP (NCI)Hs.122231
Alternative Splicing GalleryENSG00000261587
Gene ExpressionTMEM249 [ NCBI-GEO ]   TMEM249 [ EBI - ARRAY_EXPRESS ]   TMEM249 [ SEEK ]   TMEM249 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM249 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340393
GTEX Portal (Tissue expression)TMEM249
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2WGJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2WGJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2WGJ8
Splice isoforms : SwissVarQ2WGJ8
PhosPhoSitePlusQ2WGJ8
Domains : Interpro (EBI)DUF4579   
Domain families : Pfam (Sanger)DUF4579 (PF15158)   
Domain families : Pfam (NCBI)pfam15158   
Conserved Domain (NCBI)TMEM249
DMDM Disease mutations340393
Blocks (Seattle)TMEM249
SuperfamilyQ2WGJ8
Human Protein AtlasENSG00000261587
Peptide AtlasQ2WGJ8
IPIIPI00257612   IPI00975912   
Protein Interaction databases
DIP (DOE-UCLA)Q2WGJ8
IntAct (EBI)Q2WGJ8
FunCoupENSG00000261587
BioGRIDTMEM249
STRING (EMBL)TMEM249
ZODIACTMEM249
Ontologies - Pathways
QuickGOQ2WGJ8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM249
Atlas of Cancer Signalling NetworkTMEM249
Wikipedia pathwaysTMEM249
Orthology - Evolution
OrthoDB340393
GeneTree (enSembl)ENSG00000261587
Phylogenetic Trees/Animal Genes : TreeFamTMEM249
HOVERGENQ2WGJ8
HOGENOMQ2WGJ8
Homologs : HomoloGeneTMEM249
Homology/Alignments : Family Browser (UCSC)TMEM249
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM249 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM249
dbVarTMEM249
ClinVarTMEM249
1000_GenomesTMEM249 
Exome Variant ServerTMEM249
ExAC (Exome Aggregation Consortium)TMEM249 (select the gene name)
Genetic variants : HAPMAP340393
Genomic Variants (DGV)TMEM249 [DGVbeta]
DECIPHERTMEM249 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM249 
Mutations
ICGC Data PortalTMEM249 
TCGA Data PortalTMEM249 
Broad Tumor PortalTMEM249
OASIS PortalTMEM249 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM249
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM249
DgiDB (Drug Gene Interaction Database)TMEM249
DoCM (Curated mutations)TMEM249 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM249 (select a term)
intoGenTMEM249
Cancer3DTMEM249(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM249
Genetic Testing Registry TMEM249
NextProtQ2WGJ8 [Medical]
TSGene340393
GENETestsTMEM249
Target ValidationTMEM249
Huge Navigator TMEM249 [HugePedia]
snp3D : Map Gene to Disease340393
BioCentury BCIQTMEM249
ClinGenTMEM249
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340393
Chemical/Pharm GKB GenePA166049108
Clinical trialTMEM249
Miscellaneous
canSAR (ICR)TMEM249 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM249
EVEXTMEM249
GoPubMedTMEM249
iHOPTMEM249
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:46:14 CEST 2017

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