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TMEM252 (transmembrane protein 252)

Identity

Alias_namesC9orf71
chromosome 9 open reading frame 71
Alias_symbol (synonym)MGC34760
Other alias
HGNC (Hugo) TMEM252
LocusID (NCBI) 169693
Atlas_Id 74915
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 68536582 and ends at 68540867 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM252   28537
Cards
Entrez_Gene (NCBI)TMEM252  169693  transmembrane protein 252
AliasesC9orf71
GeneCards (Weizmann)TMEM252
Ensembl hg19 (Hinxton)ENSG00000181778 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181778 [Gene_View]  chr9:68536582-68540867 [Contig_View]  TMEM252 [Vega]
ICGC DataPortalENSG00000181778
TCGA cBioPortalTMEM252
AceView (NCBI)TMEM252
Genatlas (Paris)TMEM252
WikiGenes169693
SOURCE (Princeton)TMEM252
Genetics Home Reference (NIH)TMEM252
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM252  -     chr9:68536582-68540867 -  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM252  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblTMEM252 - 9q21.11 [CytoView hg19]  TMEM252 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBITMEM252 [Mapview hg19]  TMEM252 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029780 DQ890797 DQ893952
RefSeq transcript (Entrez)NM_153237
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM252
Cluster EST : UnigeneHs.663056 [ NCBI ]
CGAP (NCI)Hs.663056
Alternative Splicing GalleryENSG00000181778
Gene ExpressionTMEM252 [ NCBI-GEO ]   TMEM252 [ EBI - ARRAY_EXPRESS ]   TMEM252 [ SEEK ]   TMEM252 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM252 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)169693
GTEX Portal (Tissue expression)TMEM252
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6L7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6L7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6L7
Splice isoforms : SwissVarQ8N6L7
PhosPhoSitePlusQ8N6L7
Domains : Interpro (EBI)TMEM252   
Domain families : Pfam (Sanger)TMEM252 (PF15664)   
Domain families : Pfam (NCBI)pfam15664   
Domain structure : Prodom (Prabi Lyon)PD654875 (PD654875)   
Conserved Domain (NCBI)TMEM252
DMDM Disease mutations169693
Blocks (Seattle)TMEM252
SuperfamilyQ8N6L7
Human Protein AtlasENSG00000181778
Peptide AtlasQ8N6L7
HPRD18569
IPIIPI00167033   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6L7
IntAct (EBI)Q8N6L7
FunCoupENSG00000181778
BioGRIDTMEM252
STRING (EMBL)TMEM252
ZODIACTMEM252
Ontologies - Pathways
QuickGOQ8N6L7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM252
Atlas of Cancer Signalling NetworkTMEM252
Wikipedia pathwaysTMEM252
Orthology - Evolution
OrthoDB169693
GeneTree (enSembl)ENSG00000181778
Phylogenetic Trees/Animal Genes : TreeFamTMEM252
HOVERGENQ8N6L7
HOGENOMQ8N6L7
Homologs : HomoloGeneTMEM252
Homology/Alignments : Family Browser (UCSC)TMEM252
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM252 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM252
dbVarTMEM252
ClinVarTMEM252
1000_GenomesTMEM252 
Exome Variant ServerTMEM252
ExAC (Exome Aggregation Consortium)TMEM252 (select the gene name)
Genetic variants : HAPMAP169693
Genomic Variants (DGV)TMEM252 [DGVbeta]
DECIPHERTMEM252 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM252 
Mutations
ICGC Data PortalTMEM252 
TCGA Data PortalTMEM252 
Broad Tumor PortalTMEM252
OASIS PortalTMEM252 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM252
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM252
DgiDB (Drug Gene Interaction Database)TMEM252
DoCM (Curated mutations)TMEM252 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM252 (select a term)
intoGenTMEM252
Cancer3DTMEM252(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM252
Genetic Testing Registry TMEM252
NextProtQ8N6L7 [Medical]
TSGene169693
GENETestsTMEM252
Target ValidationTMEM252
Huge Navigator TMEM252 [HugePedia]
snp3D : Map Gene to Disease169693
BioCentury BCIQTMEM252
ClinGenTMEM252
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD169693
Chemical/Pharm GKB GenePA134989660
Clinical trialTMEM252
Miscellaneous
canSAR (ICR)TMEM252 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM252
EVEXTMEM252
GoPubMedTMEM252
iHOPTMEM252
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:46:15 CEST 2017

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