Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM252 (transmembrane protein 252)

Identity

Alias (NCBI)C9orf71
HGNC (Hugo) TMEM252
HGNC Alias symbMGC34760
HGNC Previous nameC9orf71
HGNC Previous namechromosome 9 open reading frame 71
LocusID (NCBI) 169693
Atlas_Id 74915
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 68536582 and ends at 68540883 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM252   28537
Cards
Entrez_Gene (NCBI)TMEM252    transmembrane protein 252
AliasesC9orf71
GeneCards (Weizmann)TMEM252
Ensembl hg19 (Hinxton)ENSG00000181778 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181778 [Gene_View]  ENSG00000181778 [Sequence]  chr9:68536582-68540883 [Contig_View]  TMEM252 [Vega]
ICGC DataPortalENSG00000181778
TCGA cBioPortalTMEM252
AceView (NCBI)TMEM252
Genatlas (Paris)TMEM252
SOURCE (Princeton)TMEM252
Genetics Home Reference (NIH)TMEM252
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM252  -     chr9:68536582-68540883 -  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM252  -     9q21.11   [Description]    (hg19-Feb_2009)
GoldenPathTMEM252 - 9q21.11 [CytoView hg19]  TMEM252 - 9q21.11 [CytoView hg38]
ImmunoBaseENSG00000181778
Genome Data Viewer NCBITMEM252 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC029780
RefSeq transcript (Entrez)NM_153237
Consensus coding sequences : CCDS (NCBI)TMEM252
Gene ExpressionTMEM252 [ NCBI-GEO ]   TMEM252 [ EBI - ARRAY_EXPRESS ]   TMEM252 [ SEEK ]   TMEM252 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM252 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM252 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)169693
GTEX Portal (Tissue expression)TMEM252
Human Protein AtlasENSG00000181778-TMEM252 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6L7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6L7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6L7
PhosPhoSitePlusQ8N6L7
Domains : Interpro (EBI)TMEM252   
Domain families : Pfam (Sanger)TMEM252 (PF15664)   
Domain families : Pfam (NCBI)pfam15664   
Conserved Domain (NCBI)TMEM252
SuperfamilyQ8N6L7
AlphaFold pdb e-kbQ8N6L7   
Human Protein Atlas [tissue]ENSG00000181778-TMEM252 [tissue]
HPRD18569
Protein Interaction databases
DIP (DOE-UCLA)Q8N6L7
IntAct (EBI)Q8N6L7
BioGRIDTMEM252
STRING (EMBL)TMEM252
ZODIACTMEM252
Ontologies - Pathways
QuickGOQ8N6L7
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM252
Atlas of Cancer Signalling NetworkTMEM252
Wikipedia pathwaysTMEM252
Orthology - Evolution
OrthoDB169693
GeneTree (enSembl)ENSG00000181778
Phylogenetic Trees/Animal Genes : TreeFamTMEM252
Homologs : HomoloGeneTMEM252
Homology/Alignments : Family Browser (UCSC)TMEM252
Gene fusions - Rearrangements
Fusion : QuiverTMEM252
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM252 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM252
dbVarTMEM252
ClinVarTMEM252
MonarchTMEM252
1000_GenomesTMEM252 
Exome Variant ServerTMEM252
GNOMAD BrowserENSG00000181778
Varsome BrowserTMEM252
ACMGTMEM252 variants
VarityQ8N6L7
Genomic Variants (DGV)TMEM252 [DGVbeta]
DECIPHERTMEM252 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM252 
Mutations
ICGC Data PortalTMEM252 
TCGA Data PortalTMEM252 
Broad Tumor PortalTMEM252
OASIS PortalTMEM252 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM252  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM252
Mutations and Diseases : HGMDTMEM252
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM252
DgiDB (Drug Gene Interaction Database)TMEM252
DoCM (Curated mutations)TMEM252
CIViC (Clinical Interpretations of Variants in Cancer)TMEM252
Cancer3DTMEM252
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM252
MedgenTMEM252
Genetic Testing Registry TMEM252
NextProtQ8N6L7 [Medical]
GENETestsTMEM252
Target ValidationTMEM252
Huge Navigator TMEM252 [HugePedia]
ClinGenTMEM252
Clinical trials, drugs, therapy
MyCancerGenomeTMEM252
Protein Interactions : CTDTMEM252
Pharm GKB GenePA134989660
PharosQ8N6L7
Clinical trialTMEM252
Miscellaneous
canSAR (ICR)TMEM252
HarmonizomeTMEM252
DataMed IndexTMEM252
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM252
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:26:08 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.