Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMEM253 (transmembrane protein 253)

Identity

Alias_namesNCRNA00220
C14orf95
C14orf176
non-protein coding RNA 220
chromosome 14 open reading frame 95
chromosome 14 open reading frame 176
Other alias
HGNC (Hugo) TMEM253
LocusID (NCBI) 643382
Atlas_Id 74916
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 21098937 and ends at 21103724 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM253   32545
Cards
Entrez_Gene (NCBI)TMEM253  643382  transmembrane protein 253
AliasesC14orf176; C14orf95; NCRNA00220
GeneCards (Weizmann)TMEM253
Ensembl hg19 (Hinxton)ENSG00000232070 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232070 [Gene_View]  chr14:21098937-21103724 [Contig_View]  TMEM253 [Vega]
ICGC DataPortalENSG00000232070
TCGA cBioPortalTMEM253
AceView (NCBI)TMEM253
Genatlas (Paris)TMEM253
WikiGenes643382
SOURCE (Princeton)TMEM253
Genetics Home Reference (NIH)TMEM253
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM253  -     chr14:21098937-21103724 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM253  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM253 - 14q11.2 [CytoView hg19]  TMEM253 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBITMEM253 [Mapview hg19]  TMEM253 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA284798 AA284845
RefSeq transcript (Entrez)NM_001146683
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM253
Cluster EST : UnigeneHs.540107 [ NCBI ]
CGAP (NCI)Hs.540107
Alternative Splicing GalleryENSG00000232070
Gene ExpressionTMEM253 [ NCBI-GEO ]   TMEM253 [ EBI - ARRAY_EXPRESS ]   TMEM253 [ SEEK ]   TMEM253 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM253 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643382
GTEX Portal (Tissue expression)TMEM253
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7T8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7T8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7T8
Splice isoforms : SwissVarP0C7T8
PhosPhoSitePlusP0C7T8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM253
DMDM Disease mutations643382
Blocks (Seattle)TMEM253
SuperfamilyP0C7T8
Human Protein AtlasENSG00000232070
Peptide AtlasP0C7T8
IPIIPI00888890   
Protein Interaction databases
DIP (DOE-UCLA)P0C7T8
IntAct (EBI)P0C7T8
FunCoupENSG00000232070
BioGRIDTMEM253
STRING (EMBL)TMEM253
ZODIACTMEM253
Ontologies - Pathways
QuickGOP0C7T8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM253
Atlas of Cancer Signalling NetworkTMEM253
Wikipedia pathwaysTMEM253
Orthology - Evolution
OrthoDB643382
GeneTree (enSembl)ENSG00000232070
Phylogenetic Trees/Animal Genes : TreeFamTMEM253
HOVERGENP0C7T8
HOGENOMP0C7T8
Homologs : HomoloGeneTMEM253
Homology/Alignments : Family Browser (UCSC)TMEM253
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM253 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM253
dbVarTMEM253
ClinVarTMEM253
1000_GenomesTMEM253 
Exome Variant ServerTMEM253
ExAC (Exome Aggregation Consortium)TMEM253 (select the gene name)
Genetic variants : HAPMAP643382
Genomic Variants (DGV)TMEM253 [DGVbeta]
DECIPHERTMEM253 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM253 
Mutations
ICGC Data PortalTMEM253 
TCGA Data PortalTMEM253 
Broad Tumor PortalTMEM253
OASIS PortalTMEM253 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM253
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM253
DgiDB (Drug Gene Interaction Database)TMEM253
DoCM (Curated mutations)TMEM253 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM253 (select a term)
intoGenTMEM253
Cancer3DTMEM253(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM253
Genetic Testing Registry TMEM253
NextProtP0C7T8 [Medical]
TSGene643382
GENETestsTMEM253
Target ValidationTMEM253
Huge Navigator TMEM253 [HugePedia]
snp3D : Map Gene to Disease643382
BioCentury BCIQTMEM253
ClinGenTMEM253
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643382
Chemical/Pharm GKB GenePA143485392
Clinical trialTMEM253
Miscellaneous
canSAR (ICR)TMEM253 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM253
EVEXTMEM253
GoPubMedTMEM253
iHOPTMEM253
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:15 CEST 2017

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