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TMEM254 (transmembrane protein 254)

Identity

Alias_namesC10orf57
chromosome 10 open reading frame 57
Alias_symbol (synonym)FLJ13263
bA369J21.6
Other alias
HGNC (Hugo) TMEM254
LocusID (NCBI) 80195
Atlas_Id 74917
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 80079023 and ends at 80092551 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TSPAN14 (10q23.1) / TMEM254 (10q22.3)ZNF717 (3p12.3) / TMEM254 (10q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM254   25804
Cards
Entrez_Gene (NCBI)TMEM254  80195  transmembrane protein 254
AliasesC10orf57; bA369J21.6
GeneCards (Weizmann)TMEM254
Ensembl hg19 (Hinxton)ENSG00000133678 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133678 [Gene_View]  chr10:80079023-80092551 [Contig_View]  TMEM254 [Vega]
ICGC DataPortalENSG00000133678
TCGA cBioPortalTMEM254
AceView (NCBI)TMEM254
Genatlas (Paris)TMEM254
WikiGenes80195
SOURCE (Princeton)TMEM254
Genetics Home Reference (NIH)TMEM254
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM254  -     chr10:80079023-80092551 +  10q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM254  -     10q22.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM254 - 10q22.3 [CytoView hg19]  TMEM254 - 10q22.3 [CytoView hg38]
Mapping of homologs : NCBITMEM254 [Mapview hg19]  TMEM254 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023325 AK222536 AK300490 AK309425 AK309980
RefSeq transcript (Entrez)NM_001270367 NM_001270368 NM_001270369 NM_001270370 NM_001270371 NM_001270372 NM_001270373 NM_001270374 NM_025125
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM254
Cluster EST : UnigeneHs.169982 [ NCBI ]
CGAP (NCI)Hs.169982
Alternative Splicing GalleryENSG00000133678
Gene ExpressionTMEM254 [ NCBI-GEO ]   TMEM254 [ EBI - ARRAY_EXPRESS ]   TMEM254 [ SEEK ]   TMEM254 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM254 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80195
GTEX Portal (Tissue expression)TMEM254
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBM7
Splice isoforms : SwissVarQ8TBM7
PhosPhoSitePlusQ8TBM7
Domains : Interpro (EBI)TMEM254   
Domain families : Pfam (Sanger)DUF4499 (PF14934)   
Domain families : Pfam (NCBI)pfam14934   
Conserved Domain (NCBI)TMEM254
DMDM Disease mutations80195
Blocks (Seattle)TMEM254
SuperfamilyQ8TBM7
Human Protein AtlasENSG00000133678
Peptide AtlasQ8TBM7
HPRD08501
IPIIPI00646889   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBM7
IntAct (EBI)Q8TBM7
FunCoupENSG00000133678
BioGRIDTMEM254
STRING (EMBL)TMEM254
ZODIACTMEM254
Ontologies - Pathways
QuickGOQ8TBM7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM254
Atlas of Cancer Signalling NetworkTMEM254
Wikipedia pathwaysTMEM254
Orthology - Evolution
OrthoDB80195
GeneTree (enSembl)ENSG00000133678
Phylogenetic Trees/Animal Genes : TreeFamTMEM254
HOVERGENQ8TBM7
HOGENOMQ8TBM7
Homologs : HomoloGeneTMEM254
Homology/Alignments : Family Browser (UCSC)TMEM254
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM254 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM254
dbVarTMEM254
ClinVarTMEM254
1000_GenomesTMEM254 
Exome Variant ServerTMEM254
ExAC (Exome Aggregation Consortium)TMEM254 (select the gene name)
Genetic variants : HAPMAP80195
Genomic Variants (DGV)TMEM254 [DGVbeta]
DECIPHERTMEM254 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM254 
Mutations
ICGC Data PortalTMEM254 
TCGA Data PortalTMEM254 
Broad Tumor PortalTMEM254
OASIS PortalTMEM254 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM254  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM254
BioMutasearch TMEM254
DgiDB (Drug Gene Interaction Database)TMEM254
DoCM (Curated mutations)TMEM254 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM254 (select a term)
intoGenTMEM254
Cancer3DTMEM254(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM254
Genetic Testing Registry TMEM254
NextProtQ8TBM7 [Medical]
TSGene80195
GENETestsTMEM254
Huge Navigator TMEM254 [HugePedia]
snp3D : Map Gene to Disease80195
BioCentury BCIQTMEM254
ClinGenTMEM254
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80195
Chemical/Pharm GKB GenePA134875855
Clinical trialTMEM254
Miscellaneous
canSAR (ICR)TMEM254 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM254
EVEXTMEM254
GoPubMedTMEM254
iHOPTMEM254
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:58:45 CEST 2017

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