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TMEM257 (transmembrane protein 257)

Identity

Alias_namesCXorf1
chromosome X open reading frame 1
Other alias
HGNC (Hugo) TMEM257
LocusID (NCBI) 9142
Atlas_Id 74923
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 144908928 and ends at 144911370 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM257   2562
Cards
Entrez_Gene (NCBI)TMEM257  9142  transmembrane protein 257
AliasesCXorf1
GeneCards (Weizmann)TMEM257
Ensembl hg19 (Hinxton)ENSG00000221870 [Gene_View]  chrX:144908928-144911370 [Contig_View]  TMEM257 [Vega]
Ensembl hg38 (Hinxton)ENSG00000221870 [Gene_View]  chrX:144908928-144911370 [Contig_View]  TMEM257 [Vega]
ICGC DataPortalENSG00000221870
TCGA cBioPortalTMEM257
AceView (NCBI)TMEM257
Genatlas (Paris)TMEM257
WikiGenes9142
SOURCE (Princeton)TMEM257
Genetics Home Reference (NIH)TMEM257
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM257  -     chrX:144908928-144911370 +  Xq27.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM257  -     Xq27.3   [Description]    (hg38-Dec_2013)
EnsemblTMEM257 - Xq27.3 [CytoView hg19]  TMEM257 - Xq27.3 [CytoView hg38]
Mapping of homologs : NCBITMEM257 [Mapview hg19]  TMEM257 [Mapview hg38]
OMIM300565   
Gene and transcription
Genbank (Entrez)AF007148 AL134413 BC113600 BC113604 HQ258719
RefSeq transcript (Entrez)NM_004709
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016553 NT_011681 NW_004929447
Consensus coding sequences : CCDS (NCBI)TMEM257
Cluster EST : UnigeneHs.106688 [ NCBI ]
CGAP (NCI)Hs.106688
Alternative Splicing GalleryENSG00000221870
Gene ExpressionTMEM257 [ NCBI-GEO ]   TMEM257 [ EBI - ARRAY_EXPRESS ]   TMEM257 [ SEEK ]   TMEM257 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM257 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9142
GTEX Portal (Tissue expression)TMEM257
Protein : pattern, domain, 3D structure
UniProt/SwissProtO96002   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO96002  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO96002
Splice isoforms : SwissVarO96002
PhosPhoSitePlusO96002
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM257
DMDM Disease mutations9142
Blocks (Seattle)TMEM257
SuperfamilyO96002
Human Protein AtlasENSG00000221870
Peptide AtlasO96002
HPRD06477
IPIIPI00014051   
Protein Interaction databases
DIP (DOE-UCLA)O96002
IntAct (EBI)O96002
FunCoupENSG00000221870
BioGRIDTMEM257
STRING (EMBL)TMEM257
ZODIACTMEM257
Ontologies - Pathways
QuickGOO96002
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  
NDEx NetworkTMEM257
Atlas of Cancer Signalling NetworkTMEM257
Wikipedia pathwaysTMEM257
Orthology - Evolution
OrthoDB9142
GeneTree (enSembl)ENSG00000221870
Phylogenetic Trees/Animal Genes : TreeFamTMEM257
HOVERGENO96002
HOGENOMO96002
Homologs : HomoloGeneTMEM257
Homology/Alignments : Family Browser (UCSC)TMEM257
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM257 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM257
dbVarTMEM257
ClinVarTMEM257
1000_GenomesTMEM257 
Exome Variant ServerTMEM257
ExAC (Exome Aggregation Consortium)TMEM257 (select the gene name)
Genetic variants : HAPMAP9142
Genomic Variants (DGV)TMEM257 [DGVbeta]
DECIPHER (Syndromes)X:144908928-144911370  ENSG00000221870
CONAN: Copy Number AnalysisTMEM257 
Mutations
ICGC Data PortalTMEM257 
TCGA Data PortalTMEM257 
Broad Tumor PortalTMEM257
OASIS PortalTMEM257 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM257
BioMutasearch TMEM257
DgiDB (Drug Gene Interaction Database)TMEM257
DoCM (Curated mutations)TMEM257 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM257 (select a term)
intoGenTMEM257
Cancer3DTMEM257(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300565   
Orphanet
MedgenTMEM257
Genetic Testing Registry TMEM257
NextProtO96002 [Medical]
TSGene9142
GENETestsTMEM257
Huge Navigator TMEM257 [HugePedia]
snp3D : Map Gene to Disease9142
BioCentury BCIQTMEM257
ClinGenTMEM257
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9142
Chemical/Pharm GKB GenePA27059
Clinical trialTMEM257
Miscellaneous
canSAR (ICR)TMEM257 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM257
EVEXTMEM257
GoPubMedTMEM257
iHOPTMEM257
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:52 CET 2017

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