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TMEM258 (transmembrane protein 258)

Identity

Alias_namesC11orf10
chromosome 11 open reading frame 10
Other alias
HGNC (Hugo) TMEM258
LocusID (NCBI) 746
Atlas_Id 74924
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 61789130 and ends at 61792613 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDB1 (11q12.2) / TMEM258 (11q12.2)SDHAF2 (11q12.2) / TMEM258 (11q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM258   1164
Cards
Entrez_Gene (NCBI)TMEM258  746  transmembrane protein 258
AliasesC11orf10
GeneCards (Weizmann)TMEM258
Ensembl hg19 (Hinxton)ENSG00000134825 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134825 [Gene_View]  chr11:61789130-61792613 [Contig_View]  TMEM258 [Vega]
ICGC DataPortalENSG00000134825
TCGA cBioPortalTMEM258
AceView (NCBI)TMEM258
Genatlas (Paris)TMEM258
WikiGenes746
SOURCE (Princeton)TMEM258
Genetics Home Reference (NIH)TMEM258
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM258  -     chr11:61789130-61792613 -  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM258  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM258 - 11q12.2 [CytoView hg19]  TMEM258 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBITMEM258 [Mapview hg19]  TMEM258 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF070661 AF085986 AF086763 AK291683 BC002750
RefSeq transcript (Entrez)NM_014206
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM258
Cluster EST : UnigeneHs.437779 [ NCBI ]
CGAP (NCI)Hs.437779
Alternative Splicing GalleryENSG00000134825
Gene ExpressionTMEM258 [ NCBI-GEO ]   TMEM258 [ EBI - ARRAY_EXPRESS ]   TMEM258 [ SEEK ]   TMEM258 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM258 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)746
GTEX Portal (Tissue expression)TMEM258
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61165   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61165  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61165
Splice isoforms : SwissVarP61165
PhosPhoSitePlusP61165
Domains : Interpro (EBI)TMEM258   
Domain families : Pfam (Sanger)UPF0197 (PF05251)   
Domain families : Pfam (NCBI)pfam05251   
Conserved Domain (NCBI)TMEM258
DMDM Disease mutations746
Blocks (Seattle)TMEM258
SuperfamilyP61165
Human Protein AtlasENSG00000134825
Peptide AtlasP61165
HPRD12602
IPIIPI00003320   IPI01013786   IPI01009168   
Protein Interaction databases
DIP (DOE-UCLA)P61165
IntAct (EBI)P61165
FunCoupENSG00000134825
BioGRIDTMEM258
STRING (EMBL)TMEM258
ZODIACTMEM258
Ontologies - Pathways
QuickGOP61165
Ontology : AmiGOendoplasmic reticulum  protein N-linked glycosylation  integral component of membrane  oligosaccharyltransferase I complex  
Ontology : EGO-EBIendoplasmic reticulum  protein N-linked glycosylation  integral component of membrane  oligosaccharyltransferase I complex  
NDEx NetworkTMEM258
Atlas of Cancer Signalling NetworkTMEM258
Wikipedia pathwaysTMEM258
Orthology - Evolution
OrthoDB746
GeneTree (enSembl)ENSG00000134825
Phylogenetic Trees/Animal Genes : TreeFamTMEM258
HOVERGENP61165
HOGENOMP61165
Homologs : HomoloGeneTMEM258
Homology/Alignments : Family Browser (UCSC)TMEM258
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM258 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM258
dbVarTMEM258
ClinVarTMEM258
1000_GenomesTMEM258 
Exome Variant ServerTMEM258
ExAC (Exome Aggregation Consortium)TMEM258 (select the gene name)
Genetic variants : HAPMAP746
Genomic Variants (DGV)TMEM258 [DGVbeta]
DECIPHERTMEM258 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM258 
Mutations
ICGC Data PortalTMEM258 
TCGA Data PortalTMEM258 
Broad Tumor PortalTMEM258
OASIS PortalTMEM258 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM258
BioMutasearch TMEM258
DgiDB (Drug Gene Interaction Database)TMEM258
DoCM (Curated mutations)TMEM258 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM258 (select a term)
intoGenTMEM258
Cancer3DTMEM258(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM258
Genetic Testing Registry TMEM258
NextProtP61165 [Medical]
TSGene746
GENETestsTMEM258
Target ValidationTMEM258
Huge Navigator TMEM258 [HugePedia]
snp3D : Map Gene to Disease746
BioCentury BCIQTMEM258
ClinGenTMEM258
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD746
Chemical/Pharm GKB GenePA25478
Clinical trialTMEM258
Miscellaneous
canSAR (ICR)TMEM258 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM258
EVEXTMEM258
GoPubMedTMEM258
iHOPTMEM258
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:57 CEST 2017

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