Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM260 (transmembrane protein 260)

Identity

Alias_namesC14orf101
chromosome 14 open reading frame 101
Alias_symbol (synonym)FLJ20392
Other alias
HGNC (Hugo) TMEM260
LocusID (NCBI) 54916
Atlas_Id 54835
Location 14q22.3  [Link to chromosome band 14q22]
Location_base_pair Starts at 57046511 and ends at 57116232 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM260 (14q22.3) / MLIP (6p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM260   20185
Cards
Entrez_Gene (NCBI)TMEM260  54916  transmembrane protein 260
AliasesC14orf101
GeneCards (Weizmann)TMEM260
Ensembl hg19 (Hinxton)ENSG00000070269 [Gene_View]  chr14:57046511-57116232 [Contig_View]  TMEM260 [Vega]
Ensembl hg38 (Hinxton)ENSG00000070269 [Gene_View]  chr14:57046511-57116232 [Contig_View]  TMEM260 [Vega]
ICGC DataPortalENSG00000070269
TCGA cBioPortalTMEM260
AceView (NCBI)TMEM260
Genatlas (Paris)TMEM260
WikiGenes54916
SOURCE (Princeton)TMEM260
Genetics Home Reference (NIH)TMEM260
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM260  -     chr14:57046511-57116232 +  14q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM260  -     14q22.3   [Description]    (hg38-Dec_2013)
EnsemblTMEM260 - 14q22.3 [CytoView hg19]  TMEM260 - 14q22.3 [CytoView hg38]
Mapping of homologs : NCBITMEM260 [Mapview hg19]  TMEM260 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000399 AK023885 AK056291 AK293099 AK295989
RefSeq transcript (Entrez)NM_017799
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)TMEM260
Cluster EST : UnigeneHs.497253 [ NCBI ]
CGAP (NCI)Hs.497253
Alternative Splicing GalleryENSG00000070269
Gene ExpressionTMEM260 [ NCBI-GEO ]   TMEM260 [ EBI - ARRAY_EXPRESS ]   TMEM260 [ SEEK ]   TMEM260 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM260 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54916
GTEX Portal (Tissue expression)TMEM260
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX78
Splice isoforms : SwissVarQ9NX78
PhosPhoSitePlusQ9NX78
Domains : Interpro (EBI)DUF2723   
Domain families : Pfam (Sanger)DUF2723 (PF11028)   
Domain families : Pfam (NCBI)pfam11028   
Conserved Domain (NCBI)TMEM260
DMDM Disease mutations54916
Blocks (Seattle)TMEM260
SuperfamilyQ9NX78
Human Protein AtlasENSG00000070269
Peptide AtlasQ9NX78
HPRD12624
IPIIPI00375471   IPI01010534   IPI00412789   IPI01011354   IPI01026373   IPI01025799   IPI01026098   IPI01025996   IPI01026012   IPI01025419   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX78
IntAct (EBI)Q9NX78
FunCoupENSG00000070269
BioGRIDTMEM260
STRING (EMBL)TMEM260
ZODIACTMEM260
Ontologies - Pathways
QuickGOQ9NX78
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM260
Atlas of Cancer Signalling NetworkTMEM260
Wikipedia pathwaysTMEM260
Orthology - Evolution
OrthoDB54916
GeneTree (enSembl)ENSG00000070269
Phylogenetic Trees/Animal Genes : TreeFamTMEM260
HOVERGENQ9NX78
HOGENOMQ9NX78
Homologs : HomoloGeneTMEM260
Homology/Alignments : Family Browser (UCSC)TMEM260
Gene fusions - Rearrangements
Fusion : MitelmanTMEM260/MLIP [14q22.3/6p12.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM260 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM260
dbVarTMEM260
ClinVarTMEM260
1000_GenomesTMEM260 
Exome Variant ServerTMEM260
ExAC (Exome Aggregation Consortium)TMEM260 (select the gene name)
Genetic variants : HAPMAP54916
Genomic Variants (DGV)TMEM260 [DGVbeta]
DECIPHER (Syndromes)14:57046511-57116232  ENSG00000070269
CONAN: Copy Number AnalysisTMEM260 
Mutations
ICGC Data PortalTMEM260 
TCGA Data PortalTMEM260 
Broad Tumor PortalTMEM260
OASIS PortalTMEM260 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM260
BioMutasearch TMEM260
DgiDB (Drug Gene Interaction Database)TMEM260
DoCM (Curated mutations)TMEM260 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM260 (select a term)
intoGenTMEM260
Cancer3DTMEM260(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM260
Genetic Testing Registry TMEM260
NextProtQ9NX78 [Medical]
TSGene54916
GENETestsTMEM260
Huge Navigator TMEM260 [HugePedia]
snp3D : Map Gene to Disease54916
BioCentury BCIQTMEM260
ClinGenTMEM260
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54916
Chemical/Pharm GKB GenePA134894829
Clinical trialTMEM260
Miscellaneous
canSAR (ICR)TMEM260 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM260
EVEXTMEM260
GoPubMedTMEM260
iHOPTMEM260
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:22:45 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.