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TMEM260 (transmembrane protein 260)

Identity

Alias (NCBI)C14orf101
SHDRA
HGNC (Hugo) TMEM260
HGNC Alias symbFLJ20392
HGNC Previous nameC14orf101
HGNC Previous namechromosome 14 open reading frame 101
LocusID (NCBI) 54916
Atlas_Id 54835
Location 14q22.3  [Link to chromosome band 14q22]
Location_base_pair Starts at 56579798 and ends at 56649514 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM260 (14q22.3) / MLIP (6p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM260   20185
Cards
Entrez_Gene (NCBI)TMEM260    transmembrane protein 260
AliasesC14orf101; SHDRA
GeneCards (Weizmann)TMEM260
Ensembl hg19 (Hinxton)ENSG00000070269 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000070269 [Gene_View]  ENSG00000070269 [Sequence]  chr14:56579798-56649514 [Contig_View]  TMEM260 [Vega]
ICGC DataPortalENSG00000070269
TCGA cBioPortalTMEM260
AceView (NCBI)TMEM260
Genatlas (Paris)TMEM260
SOURCE (Princeton)TMEM260
Genetics Home Reference (NIH)TMEM260
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM260  -     chr14:56579798-56649514 +  14q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM260  -     14q22.3   [Description]    (hg19-Feb_2009)
GoldenPathTMEM260 - 14q22.3 [CytoView hg19]  TMEM260 - 14q22.3 [CytoView hg38]
ImmunoBaseENSG00000070269
Genome Data Viewer NCBITMEM260 [Mapview hg19]  
OMIM617449   617478   
Gene and transcription
Genbank (Entrez)AK000399 AK023885 AK056291 AK293099 AK295989
RefSeq transcript (Entrez)NM_017799
Consensus coding sequences : CCDS (NCBI)TMEM260
Gene ExpressionTMEM260 [ NCBI-GEO ]   TMEM260 [ EBI - ARRAY_EXPRESS ]   TMEM260 [ SEEK ]   TMEM260 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM260 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM260 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54916
GTEX Portal (Tissue expression)TMEM260
Human Protein AtlasENSG00000070269-TMEM260 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX78
PhosPhoSitePlusQ9NX78
Domains : Interpro (EBI)DUF2723   
Domain families : Pfam (Sanger)DUF2723 (PF11028)   
Domain families : Pfam (NCBI)pfam11028   
Conserved Domain (NCBI)TMEM260
SuperfamilyQ9NX78
AlphaFold pdb e-kbQ9NX78   
Human Protein Atlas [tissue]ENSG00000070269-TMEM260 [tissue]
HPRD12624
Protein Interaction databases
DIP (DOE-UCLA)Q9NX78
IntAct (EBI)Q9NX78
BioGRIDTMEM260
STRING (EMBL)TMEM260
ZODIACTMEM260
Ontologies - Pathways
QuickGOQ9NX78
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM260
Atlas of Cancer Signalling NetworkTMEM260
Wikipedia pathwaysTMEM260
Orthology - Evolution
OrthoDB54916
GeneTree (enSembl)ENSG00000070269
Phylogenetic Trees/Animal Genes : TreeFamTMEM260
Homologs : HomoloGeneTMEM260
Homology/Alignments : Family Browser (UCSC)TMEM260
Gene fusions - Rearrangements
Fusion : MitelmanTMEM260/MLIP [14q22.3/6p12.1]  
Fusion : QuiverTMEM260
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM260 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM260
dbVarTMEM260
ClinVarTMEM260
MonarchTMEM260
1000_GenomesTMEM260 
Exome Variant ServerTMEM260
GNOMAD BrowserENSG00000070269
Varsome BrowserTMEM260
ACMGTMEM260 variants
VarityQ9NX78
Genomic Variants (DGV)TMEM260 [DGVbeta]
DECIPHERTMEM260 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM260 
Mutations
ICGC Data PortalTMEM260 
TCGA Data PortalTMEM260 
Broad Tumor PortalTMEM260
OASIS PortalTMEM260 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM260  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM260
Mutations and Diseases : HGMDTMEM260
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM260
DgiDB (Drug Gene Interaction Database)TMEM260
DoCM (Curated mutations)TMEM260
CIViC (Clinical Interpretations of Variants in Cancer)TMEM260
Cancer3DTMEM260
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617449    617478   
Orphanet
DisGeNETTMEM260
MedgenTMEM260
Genetic Testing Registry TMEM260
NextProtQ9NX78 [Medical]
GENETestsTMEM260
Target ValidationTMEM260
Huge Navigator TMEM260 [HugePedia]
ClinGenTMEM260
Clinical trials, drugs, therapy
MyCancerGenomeTMEM260
Protein Interactions : CTDTMEM260
Pharm GKB GenePA134894829
PharosQ9NX78
Clinical trialTMEM260
Miscellaneous
canSAR (ICR)TMEM260
HarmonizomeTMEM260
DataMed IndexTMEM260
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM260
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:30 CEST 2021

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