Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMEM266 (transmembrane protein 266)

Identity

Alias_namesC15orf27
chromosome 15 open reading frame 27
Alias_symbol (synonym)FLJ38190
Other aliasHVRP1
HGNC (Hugo) TMEM266
LocusID (NCBI) 123591
Atlas_Id 78024
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 76059958 and ends at 76204963 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATN1 (12p13.31) / TMEM266 (15q24.2)TMEM266 (15q24.2) / ATN1 (12p13.31)TMEM266 (15q24.2) / TMEM266 (15q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM266   26763
Cards
Entrez_Gene (NCBI)TMEM266  123591  transmembrane protein 266
AliasesC15orf27; HVRP1
GeneCards (Weizmann)TMEM266
Ensembl hg19 (Hinxton)ENSG00000169758 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169758 [Gene_View]  chr15:76059958-76204963 [Contig_View]  TMEM266 [Vega]
ICGC DataPortalENSG00000169758
TCGA cBioPortalTMEM266
AceView (NCBI)TMEM266
Genatlas (Paris)TMEM266
WikiGenes123591
SOURCE (Princeton)TMEM266
Genetics Home Reference (NIH)TMEM266
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM266  -     chr15:76059958-76204963 +  15q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM266  -     15q24.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM266 - 15q24.2 [CytoView hg19]  TMEM266 - 15q24.2 [CytoView hg38]
Mapping of homologs : NCBITMEM266 [Mapview hg19]  TMEM266 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054866 AK056777 AK058126 AK095509 AK308676
RefSeq transcript (Entrez)NM_152335
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM266
Cluster EST : UnigeneHs.661411 [ NCBI ]
CGAP (NCI)Hs.661411
Alternative Splicing GalleryENSG00000169758
Gene ExpressionTMEM266 [ NCBI-GEO ]   TMEM266 [ EBI - ARRAY_EXPRESS ]   TMEM266 [ SEEK ]   TMEM266 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM266 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123591
GTEX Portal (Tissue expression)TMEM266
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M3C6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M3C6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M3C6
Splice isoforms : SwissVarQ2M3C6
PhosPhoSitePlusQ2M3C6
Domains : Interpro (EBI)Channel_four-helix_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM266
DMDM Disease mutations123591
Blocks (Seattle)TMEM266
SuperfamilyQ2M3C6
Human Protein AtlasENSG00000169758
Peptide AtlasQ2M3C6
HPRD08235
IPIIPI00784407   IPI00167656   
Protein Interaction databases
DIP (DOE-UCLA)Q2M3C6
IntAct (EBI)Q2M3C6
FunCoupENSG00000169758
BioGRIDTMEM266
STRING (EMBL)TMEM266
ZODIACTMEM266
Ontologies - Pathways
QuickGOQ2M3C6
Ontology : AmiGOcytosol  plasma membrane  integral component of membrane  
Ontology : EGO-EBIcytosol  plasma membrane  integral component of membrane  
NDEx NetworkTMEM266
Atlas of Cancer Signalling NetworkTMEM266
Wikipedia pathwaysTMEM266
Orthology - Evolution
OrthoDB123591
GeneTree (enSembl)ENSG00000169758
Phylogenetic Trees/Animal Genes : TreeFamTMEM266
HOVERGENQ2M3C6
HOGENOMQ2M3C6
Homologs : HomoloGeneTMEM266
Homology/Alignments : Family Browser (UCSC)TMEM266
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM266 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM266
dbVarTMEM266
ClinVarTMEM266
1000_GenomesTMEM266 
Exome Variant ServerTMEM266
ExAC (Exome Aggregation Consortium)TMEM266 (select the gene name)
Genetic variants : HAPMAP123591
Genomic Variants (DGV)TMEM266 [DGVbeta]
DECIPHERTMEM266 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM266 
Mutations
ICGC Data PortalTMEM266 
TCGA Data PortalTMEM266 
Broad Tumor PortalTMEM266
OASIS PortalTMEM266 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM266
BioMutasearch TMEM266
DgiDB (Drug Gene Interaction Database)TMEM266
DoCM (Curated mutations)TMEM266 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM266 (select a term)
intoGenTMEM266
Cancer3DTMEM266(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM266
Genetic Testing Registry TMEM266
NextProtQ2M3C6 [Medical]
TSGene123591
GENETestsTMEM266
Target ValidationTMEM266
Huge Navigator TMEM266 [HugePedia]
snp3D : Map Gene to Disease123591
BioCentury BCIQTMEM266
ClinGenTMEM266
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123591
Chemical/Pharm GKB GenePA134968419
Clinical trialTMEM266
Miscellaneous
canSAR (ICR)TMEM266 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM266
EVEXTMEM266
GoPubMedTMEM266
iHOPTMEM266
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:18 CEST 2017

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