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TMEM27 (transmembrane protein 27)

Identity

Alias_symbol (synonym)NX17
Other aliasNX-17
HGNC (Hugo) TMEM27
LocusID (NCBI) 57393
Atlas_Id 56553
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 15627316 and ends at 15665031 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM27   29437
Cards
Entrez_Gene (NCBI)TMEM27  57393  transmembrane protein 27
AliasesNX-17; NX17
GeneCards (Weizmann)TMEM27
Ensembl hg19 (Hinxton)ENSG00000147003 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147003 [Gene_View]  chrX:15627316-15665031 [Contig_View]  TMEM27 [Vega]
ICGC DataPortalENSG00000147003
TCGA cBioPortalTMEM27
AceView (NCBI)TMEM27
Genatlas (Paris)TMEM27
WikiGenes57393
SOURCE (Princeton)TMEM27
Genetics Home Reference (NIH)TMEM27
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM27  -     chrX:15627316-15665031 -  Xp22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM27  -     Xp22.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM27 - Xp22.2 [CytoView hg19]  TMEM27 - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBITMEM27 [Mapview hg19]  TMEM27 [Mapview hg38]
OMIM300631   
Gene and transcription
Genbank (Entrez)AF229179 AI470468 AK313835 AY359060 BC014317
RefSeq transcript (Entrez)NM_020665
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM27
Cluster EST : UnigeneHs.129614 [ NCBI ]
CGAP (NCI)Hs.129614
Alternative Splicing GalleryENSG00000147003
Gene ExpressionTMEM27 [ NCBI-GEO ]   TMEM27 [ EBI - ARRAY_EXPRESS ]   TMEM27 [ SEEK ]   TMEM27 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57393
GTEX Portal (Tissue expression)TMEM27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBJ8
Splice isoforms : SwissVarQ9HBJ8
PhosPhoSitePlusQ9HBJ8
Domains : Interpro (EBI)Collectrin_dom    Peptidase_M2   
Domain families : Pfam (Sanger)Collectrin (PF16959)   
Domain families : Pfam (NCBI)pfam16959   
Conserved Domain (NCBI)TMEM27
DMDM Disease mutations57393
Blocks (Seattle)TMEM27
SuperfamilyQ9HBJ8
Human Protein AtlasENSG00000147003
Peptide AtlasQ9HBJ8
HPRD06668
IPIIPI00010191   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBJ8
IntAct (EBI)Q9HBJ8
FunCoupENSG00000147003
BioGRIDTMEM27
STRING (EMBL)TMEM27
ZODIACTMEM27
Ontologies - Pathways
QuickGOQ9HBJ8
Ontology : AmiGOprotein binding  cytoplasm  proteolysis  metallopeptidase activity  peptidyl-dipeptidase activity  integral component of membrane  brush border membrane  positive regulation of SNARE complex assembly  positive regulation of insulin secretion involved in cellular response to glucose stimulus  positive regulation of calcium ion-dependent exocytosis  positive regulation of amino acid transport  extracellular exosome  
Ontology : EGO-EBIprotein binding  cytoplasm  proteolysis  metallopeptidase activity  peptidyl-dipeptidase activity  integral component of membrane  brush border membrane  positive regulation of SNARE complex assembly  positive regulation of insulin secretion involved in cellular response to glucose stimulus  positive regulation of calcium ion-dependent exocytosis  positive regulation of amino acid transport  extracellular exosome  
NDEx NetworkTMEM27
Atlas of Cancer Signalling NetworkTMEM27
Wikipedia pathwaysTMEM27
Orthology - Evolution
OrthoDB57393
GeneTree (enSembl)ENSG00000147003
Phylogenetic Trees/Animal Genes : TreeFamTMEM27
HOVERGENQ9HBJ8
HOGENOMQ9HBJ8
Homologs : HomoloGeneTMEM27
Homology/Alignments : Family Browser (UCSC)TMEM27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM27
dbVarTMEM27
ClinVarTMEM27
1000_GenomesTMEM27 
Exome Variant ServerTMEM27
ExAC (Exome Aggregation Consortium)TMEM27 (select the gene name)
Genetic variants : HAPMAP57393
Genomic Variants (DGV)TMEM27 [DGVbeta]
DECIPHERTMEM27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM27 
Mutations
ICGC Data PortalTMEM27 
TCGA Data PortalTMEM27 
Broad Tumor PortalTMEM27
OASIS PortalTMEM27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TMEM27
DgiDB (Drug Gene Interaction Database)TMEM27
DoCM (Curated mutations)TMEM27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM27 (select a term)
intoGenTMEM27
Cancer3DTMEM27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300631   
Orphanet
MedgenTMEM27
Genetic Testing Registry TMEM27
NextProtQ9HBJ8 [Medical]
TSGene57393
GENETestsTMEM27
Huge Navigator TMEM27 [HugePedia]
snp3D : Map Gene to Disease57393
BioCentury BCIQTMEM27
ClinGenTMEM27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57393
Chemical/Pharm GKB GenePA134994199
Clinical trialTMEM27
Miscellaneous
canSAR (ICR)TMEM27 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM27
EVEXTMEM27
GoPubMedTMEM27
iHOPTMEM27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:41:23 CEST 2017

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