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TMEM270 (transmembrane protein 270)

Identity

Alias_namesWBSCR28
Williams-Beuren syndrome chromosome region 28
Alias_symbol (synonym)MGC26719
Other alias
HGNC (Hugo) TMEM270
LocusID (NCBI) 135886
Atlas_Id 79704
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 73861159 and ends at 73865893 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TMEM270   23018
Cards
Entrez_Gene (NCBI)TMEM270  135886  transmembrane protein 270
AliasesWBSCR28
GeneCards (Weizmann)TMEM270
Ensembl hg19 (Hinxton)ENSG00000175877 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175877 [Gene_View]  chr7:73861159-73865893 [Contig_View]  TMEM270 [Vega]
ICGC DataPortalENSG00000175877
TCGA cBioPortalTMEM270
AceView (NCBI)TMEM270
Genatlas (Paris)TMEM270
WikiGenes135886
SOURCE (Princeton)TMEM270
Genetics Home Reference (NIH)TMEM270
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM270  -     chr7:73861159-73865893 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM270  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblTMEM270 - 7q11.23 [CytoView hg19]  TMEM270 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBITMEM270 [Mapview hg19]  TMEM270 [Mapview hg38]
OMIM612547   
Gene and transcription
Genbank (Entrez)AA426067 AY372053 AY372054 BC030643 GQ129394
RefSeq transcript (Entrez)NM_182504
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM270
Cluster EST : UnigeneHs.647026 [ NCBI ]
CGAP (NCI)Hs.647026
Alternative Splicing GalleryENSG00000175877
Gene ExpressionTMEM270 [ NCBI-GEO ]   TMEM270 [ EBI - ARRAY_EXPRESS ]   TMEM270 [ SEEK ]   TMEM270 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM270 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135886
GTEX Portal (Tissue expression)TMEM270
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UE05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UE05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UE05
Splice isoforms : SwissVarQ6UE05
PhosPhoSitePlusQ6UE05
Domains : Interpro (EBI)WBS28   
Domain families : Pfam (Sanger)WBS28 (PF15164)   
Domain families : Pfam (NCBI)pfam15164   
Conserved Domain (NCBI)TMEM270
DMDM Disease mutations135886
Blocks (Seattle)TMEM270
SuperfamilyQ6UE05
Human Protein AtlasENSG00000175877
Peptide AtlasQ6UE05
IPIIPI00169282   IPI00868838   
Protein Interaction databases
DIP (DOE-UCLA)Q6UE05
IntAct (EBI)Q6UE05
FunCoupENSG00000175877
BioGRIDTMEM270
STRING (EMBL)TMEM270
ZODIACTMEM270
Ontologies - Pathways
QuickGOQ6UE05
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM270
Atlas of Cancer Signalling NetworkTMEM270
Wikipedia pathwaysTMEM270
Orthology - Evolution
OrthoDB135886
GeneTree (enSembl)ENSG00000175877
Phylogenetic Trees/Animal Genes : TreeFamTMEM270
HOVERGENQ6UE05
HOGENOMQ6UE05
Homologs : HomoloGeneTMEM270
Homology/Alignments : Family Browser (UCSC)TMEM270
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM270 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM270
dbVarTMEM270
ClinVarTMEM270
1000_GenomesTMEM270 
Exome Variant ServerTMEM270
ExAC (Exome Aggregation Consortium)TMEM270 (select the gene name)
Genetic variants : HAPMAP135886
Genomic Variants (DGV)TMEM270 [DGVbeta]
DECIPHERTMEM270 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM270 
Mutations
ICGC Data PortalTMEM270 
TCGA Data PortalTMEM270 
Broad Tumor PortalTMEM270
OASIS PortalTMEM270 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM270
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM270
DgiDB (Drug Gene Interaction Database)TMEM270
DoCM (Curated mutations)TMEM270 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM270 (select a term)
intoGenTMEM270
Cancer3DTMEM270(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612547   
Orphanet
MedgenTMEM270
Genetic Testing Registry TMEM270
NextProtQ6UE05 [Medical]
TSGene135886
GENETestsTMEM270
Target ValidationTMEM270
Huge Navigator TMEM270 [HugePedia]
snp3D : Map Gene to Disease135886
BioCentury BCIQTMEM270
ClinGenTMEM270
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135886
Chemical/Pharm GKB GenePA145147726
Clinical trialTMEM270
Miscellaneous
canSAR (ICR)TMEM270 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM270
EVEXTMEM270
GoPubMedTMEM270
iHOPTMEM270
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:58 CEST 2017

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