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TMEM30B (transmembrane protein 30B)

Identity

Alias_symbol (synonym)CDC50B
Other alias
HGNC (Hugo) TMEM30B
LocusID (NCBI) 161291
Atlas_Id 74931
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 61277371 and ends at 61281812 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM30B   27254
Cards
Entrez_Gene (NCBI)TMEM30B  161291  transmembrane protein 30B
AliasesCDC50B
GeneCards (Weizmann)TMEM30B
Ensembl hg19 (Hinxton)ENSG00000182107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182107 [Gene_View]  chr14:61277371-61281812 [Contig_View]  TMEM30B [Vega]
ICGC DataPortalENSG00000182107
TCGA cBioPortalTMEM30B
AceView (NCBI)TMEM30B
Genatlas (Paris)TMEM30B
WikiGenes161291
SOURCE (Princeton)TMEM30B
Genetics Home Reference (NIH)TMEM30B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM30B  -     chr14:61277371-61281812 -  14q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM30B  -     14q23.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM30B - 14q23.1 [CytoView hg19]  TMEM30B - 14q23.1 [CytoView hg38]
Mapping of homologs : NCBITMEM30B [Mapview hg19]  TMEM30B [Mapview hg38]
OMIM611029   
Gene and transcription
Genbank (Entrez)AK091169 AL080078 BC101726 BC113559 DA431345
RefSeq transcript (Entrez)NM_001017970
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM30B
Cluster EST : UnigeneHs.146180 [ NCBI ]
CGAP (NCI)Hs.146180
Alternative Splicing GalleryENSG00000182107
Gene ExpressionTMEM30B [ NCBI-GEO ]   TMEM30B [ EBI - ARRAY_EXPRESS ]   TMEM30B [ SEEK ]   TMEM30B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM30B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161291
GTEX Portal (Tissue expression)TMEM30B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MIR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3MIR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3MIR4
Splice isoforms : SwissVarQ3MIR4
PhosPhoSitePlusQ3MIR4
Domains : Interpro (EBI)CDC50/LEM3_fam    TMEM30B   
Domain families : Pfam (Sanger)CDC50 (PF03381)   
Domain families : Pfam (NCBI)pfam03381   
Conserved Domain (NCBI)TMEM30B
DMDM Disease mutations161291
Blocks (Seattle)TMEM30B
SuperfamilyQ3MIR4
Human Protein AtlasENSG00000182107
Peptide AtlasQ3MIR4
HPRD18567
IPIIPI00092641   
Protein Interaction databases
DIP (DOE-UCLA)Q3MIR4
IntAct (EBI)Q3MIR4
FunCoupENSG00000182107
BioGRIDTMEM30B
STRING (EMBL)TMEM30B
ZODIACTMEM30B
Ontologies - Pathways
QuickGOQ3MIR4
Ontology : AmiGOprotein binding  plasma membrane  lipid transport  integral component of membrane  positive regulation of protein exit from endoplasmic reticulum  
Ontology : EGO-EBIprotein binding  plasma membrane  lipid transport  integral component of membrane  positive regulation of protein exit from endoplasmic reticulum  
NDEx NetworkTMEM30B
Atlas of Cancer Signalling NetworkTMEM30B
Wikipedia pathwaysTMEM30B
Orthology - Evolution
OrthoDB161291
GeneTree (enSembl)ENSG00000182107
Phylogenetic Trees/Animal Genes : TreeFamTMEM30B
HOVERGENQ3MIR4
HOGENOMQ3MIR4
Homologs : HomoloGeneTMEM30B
Homology/Alignments : Family Browser (UCSC)TMEM30B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM30B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM30B
dbVarTMEM30B
ClinVarTMEM30B
1000_GenomesTMEM30B 
Exome Variant ServerTMEM30B
ExAC (Exome Aggregation Consortium)TMEM30B (select the gene name)
Genetic variants : HAPMAP161291
Genomic Variants (DGV)TMEM30B [DGVbeta]
DECIPHERTMEM30B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM30B 
Mutations
ICGC Data PortalTMEM30B 
TCGA Data PortalTMEM30B 
Broad Tumor PortalTMEM30B
OASIS PortalTMEM30B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM30B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM30B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM30B
DgiDB (Drug Gene Interaction Database)TMEM30B
DoCM (Curated mutations)TMEM30B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM30B (select a term)
intoGenTMEM30B
Cancer3DTMEM30B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611029   
Orphanet
MedgenTMEM30B
Genetic Testing Registry TMEM30B
NextProtQ3MIR4 [Medical]
TSGene161291
GENETestsTMEM30B
Target ValidationTMEM30B
Huge Navigator TMEM30B [HugePedia]
snp3D : Map Gene to Disease161291
BioCentury BCIQTMEM30B
ClinGenTMEM30B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161291
Chemical/Pharm GKB GenePA134993260
Clinical trialTMEM30B
Miscellaneous
canSAR (ICR)TMEM30B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM30B
EVEXTMEM30B
GoPubMedTMEM30B
iHOPTMEM30B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:19 CEST 2017

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