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TMEM30B (transmembrane protein 30B)

Identity

Alias (NCBI)CDC50B
HGNC (Hugo) TMEM30B
HGNC Alias symbCDC50B
LocusID (NCBI) 161291
Atlas_Id 57694
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 61277371 and ends at 61281338 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM30B   27254
Cards
Entrez_Gene (NCBI)TMEM30B    transmembrane protein 30B
AliasesCDC50B
GeneCards (Weizmann)TMEM30B
Ensembl hg19 (Hinxton)ENSG00000182107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182107 [Gene_View]  ENSG00000182107 [Sequence]  chr14:61277371-61281338 [Contig_View]  TMEM30B [Vega]
ICGC DataPortalENSG00000182107
TCGA cBioPortalTMEM30B
AceView (NCBI)TMEM30B
Genatlas (Paris)TMEM30B
SOURCE (Princeton)TMEM30B
Genetics Home Reference (NIH)TMEM30B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM30B  -     chr14:61277371-61281338 -  14q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM30B  -     14q23.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM30B - 14q23.1 [CytoView hg19]  TMEM30B - 14q23.1 [CytoView hg38]
ImmunoBaseENSG00000182107
Genome Data Viewer NCBITMEM30B [Mapview hg19]  
OMIM611029   
Gene and transcription
Genbank (Entrez)AK091169 AL080078 BC101726 BC113559 DA431345
RefSeq transcript (Entrez)NM_001017970
Consensus coding sequences : CCDS (NCBI)TMEM30B
Gene ExpressionTMEM30B [ NCBI-GEO ]   TMEM30B [ EBI - ARRAY_EXPRESS ]   TMEM30B [ SEEK ]   TMEM30B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM30B [ Firebrowse - Broad ]
GenevisibleExpression of TMEM30B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161291
GTEX Portal (Tissue expression)TMEM30B
Human Protein AtlasENSG00000182107-TMEM30B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MIR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3MIR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3MIR4
PhosPhoSitePlusQ3MIR4
Domains : Interpro (EBI)CDC50/LEM3_fam    TMEM30B   
Domain families : Pfam (Sanger)CDC50 (PF03381)   
Domain families : Pfam (NCBI)pfam03381   
Conserved Domain (NCBI)TMEM30B
SuperfamilyQ3MIR4
AlphaFold pdb e-kbQ3MIR4   
Human Protein Atlas [tissue]ENSG00000182107-TMEM30B [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q3MIR4
IntAct (EBI)Q3MIR4
BioGRIDTMEM30B
STRING (EMBL)TMEM30B
ZODIACTMEM30B
Ontologies - Pathways
QuickGOQ3MIR4
Ontology : AmiGOprotein binding  endoplasmic reticulum  Golgi apparatus  plasma membrane  aminophospholipid flippase activity  aminophospholipid transport  integral component of membrane  phospholipid translocation  positive regulation of protein exit from endoplasmic reticulum  aminophospholipid translocation  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  Golgi apparatus  plasma membrane  aminophospholipid flippase activity  aminophospholipid transport  integral component of membrane  phospholipid translocation  positive regulation of protein exit from endoplasmic reticulum  aminophospholipid translocation  
NDEx NetworkTMEM30B
Atlas of Cancer Signalling NetworkTMEM30B
Wikipedia pathwaysTMEM30B
Orthology - Evolution
OrthoDB161291
GeneTree (enSembl)ENSG00000182107
Phylogenetic Trees/Animal Genes : TreeFamTMEM30B
Homologs : HomoloGeneTMEM30B
Homology/Alignments : Family Browser (UCSC)TMEM30B
Gene fusions - Rearrangements
Fusion : QuiverTMEM30B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM30B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM30B
dbVarTMEM30B
ClinVarTMEM30B
MonarchTMEM30B
1000_GenomesTMEM30B 
Exome Variant ServerTMEM30B
GNOMAD BrowserENSG00000182107
Varsome BrowserTMEM30B
ACMGTMEM30B variants
VarityQ3MIR4
Genomic Variants (DGV)TMEM30B [DGVbeta]
DECIPHERTMEM30B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM30B 
Mutations
ICGC Data PortalTMEM30B 
TCGA Data PortalTMEM30B 
Broad Tumor PortalTMEM30B
OASIS PortalTMEM30B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM30B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM30B
Mutations and Diseases : HGMDTMEM30B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM30B
DgiDB (Drug Gene Interaction Database)TMEM30B
DoCM (Curated mutations)TMEM30B
CIViC (Clinical Interpretations of Variants in Cancer)TMEM30B
Cancer3DTMEM30B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611029   
Orphanet
DisGeNETTMEM30B
MedgenTMEM30B
Genetic Testing Registry TMEM30B
NextProtQ3MIR4 [Medical]
GENETestsTMEM30B
Target ValidationTMEM30B
Huge Navigator TMEM30B [HugePedia]
ClinGenTMEM30B
Clinical trials, drugs, therapy
MyCancerGenomeTMEM30B
Protein Interactions : CTDTMEM30B
Pharm GKB GenePA134993260
PharosQ3MIR4
Clinical trialTMEM30B
Miscellaneous
canSAR (ICR)TMEM30B
HarmonizomeTMEM30B
DataMed IndexTMEM30B
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM30B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:31 CEST 2021

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