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TMEM30C (transmembrane protein 30C)

Identity

Other aliasCDC50C
HGNC (Hugo) TMEM30C
LocusID (NCBI) 644444
Atlas_Id 74932
Location 3q12.1  [Link to chromosome band 3q12]
Location_base_pair Starts at 99904668 and ends at 99913030 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM30C   30443
Cards
Entrez_Gene (NCBI)TMEM30C  644444  transmembrane protein 30C
AliasesCDC50C
GeneCards (Weizmann)TMEM30C
Ensembl hg19 (Hinxton)ENSG00000235156 [Gene_View]  chr3:99904668-99913030 [Contig_View]  TMEM30C [Vega]
Ensembl hg38 (Hinxton)ENSG00000235156 [Gene_View]  chr3:99904668-99913030 [Contig_View]  TMEM30C [Vega]
ICGC DataPortalENSG00000235156
TCGA cBioPortalTMEM30C
AceView (NCBI)TMEM30C
Genatlas (Paris)TMEM30C
WikiGenes644444
SOURCE (Princeton)TMEM30C
Genetics Home Reference (NIH)TMEM30C
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM30C  -     chr3:99904668-99913030 +  3q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM30C  -     3q12.1   [Description]    (hg38-Dec_2013)
EnsemblTMEM30C - 3q12.1 [CytoView hg19]  TMEM30C - 3q12.1 [CytoView hg38]
Mapping of homologs : NCBITMEM30C [Mapview hg19]  TMEM30C [Mapview hg38]
OMIM611030   
Gene and transcription
Genbank (Entrez)AB249666 AB250297
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)TMEM30C
Cluster EST : UnigeneHs.652353 [ NCBI ]
CGAP (NCI)Hs.652353
Alternative Splicing GalleryENSG00000235156
Gene ExpressionTMEM30C [ NCBI-GEO ]   TMEM30C [ EBI - ARRAY_EXPRESS ]   TMEM30C [ SEEK ]   TMEM30C [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM30C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644444
GTEX Portal (Tissue expression)TMEM30C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0ZSE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0ZSE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0ZSE6
Splice isoforms : SwissVarA0ZSE6
PhosPhoSitePlusA0ZSE6
Domains : Interpro (EBI)CDC50/LEM3_fam    TMEM30C   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM30C
DMDM Disease mutations644444
Blocks (Seattle)TMEM30C
SuperfamilyA0ZSE6
Human Protein AtlasENSG00000235156
Peptide AtlasA0ZSE6
IPIIPI00787365   
Protein Interaction databases
DIP (DOE-UCLA)A0ZSE6
IntAct (EBI)A0ZSE6
FunCoupENSG00000235156
BioGRIDTMEM30C
STRING (EMBL)TMEM30C
ZODIACTMEM30C
Ontologies - Pathways
QuickGOA0ZSE6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM30C
Atlas of Cancer Signalling NetworkTMEM30C
Wikipedia pathwaysTMEM30C
Orthology - Evolution
OrthoDB644444
GeneTree (enSembl)ENSG00000235156
Phylogenetic Trees/Animal Genes : TreeFamTMEM30C
HOVERGENA0ZSE6
HOGENOMA0ZSE6
Homologs : HomoloGeneTMEM30C
Homology/Alignments : Family Browser (UCSC)TMEM30C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM30C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM30C
dbVarTMEM30C
ClinVarTMEM30C
1000_GenomesTMEM30C 
Exome Variant ServerTMEM30C
ExAC (Exome Aggregation Consortium)TMEM30C (select the gene name)
Genetic variants : HAPMAP644444
Genomic Variants (DGV)TMEM30C [DGVbeta]
DECIPHER (Syndromes)3:99904668-99913030  ENSG00000235156
CONAN: Copy Number AnalysisTMEM30C 
Mutations
ICGC Data PortalTMEM30C 
TCGA Data PortalTMEM30C 
Broad Tumor PortalTMEM30C
OASIS PortalTMEM30C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM30C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM30C
BioMutasearch TMEM30C
DgiDB (Drug Gene Interaction Database)TMEM30C
DoCM (Curated mutations)TMEM30C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM30C (select a term)
intoGenTMEM30C
Cancer3DTMEM30C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611030   
Orphanet
MedgenTMEM30C
Genetic Testing Registry TMEM30C
NextProtA0ZSE6 [Medical]
TSGene644444
GENETestsTMEM30C
Huge Navigator TMEM30C [HugePedia]
snp3D : Map Gene to Disease644444
BioCentury BCIQTMEM30C
ClinGenTMEM30C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644444
Chemical/Pharm GKB GenePA134950014
Clinical trialTMEM30C
Miscellaneous
canSAR (ICR)TMEM30C (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM30C
EVEXTMEM30C
GoPubMedTMEM30C
iHOPTMEM30C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:48:54 CET 2017

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