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TMEM33 (transmembrane protein 33)

Identity

Alias_symbol (synonym)FLJ10525
Other alias1600019D15Rik
SHINC3
HGNC (Hugo) TMEM33
LocusID (NCBI) 55161
Atlas_Id 74934
Location 4p13  [Link to chromosome band 4p13]
Location_base_pair Starts at 41937137 and ends at 41962824 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM33 (4p13) / EIF3L (22q13.1)TMEM33 (4p13) / PILRB (7q22.1)TMEM33 (4p13) / TMEM33 (4p13)
TMEM33 (4p13) / ZNF451 (6p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM33   25541
Cards
Entrez_Gene (NCBI)TMEM33  55161  transmembrane protein 33
Aliases1600019D15Rik; SHINC3
GeneCards (Weizmann)TMEM33
Ensembl hg19 (Hinxton)ENSG00000109133 [Gene_View]  chr4:41937137-41962824 [Contig_View]  TMEM33 [Vega]
Ensembl hg38 (Hinxton)ENSG00000109133 [Gene_View]  chr4:41937137-41962824 [Contig_View]  TMEM33 [Vega]
ICGC DataPortalENSG00000109133
TCGA cBioPortalTMEM33
AceView (NCBI)TMEM33
Genatlas (Paris)TMEM33
WikiGenes55161
SOURCE (Princeton)TMEM33
Genetics Home Reference (NIH)TMEM33
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM33  -     chr4:41937137-41962824 +  4p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM33  -     4p13   [Description]    (hg38-Dec_2013)
EnsemblTMEM33 - 4p13 [CytoView hg19]  TMEM33 - 4p13 [CytoView hg38]
Mapping of homologs : NCBITMEM33 [Mapview hg19]  TMEM33 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF403224 AK001387 AK023062 AK024587 AK056974
RefSeq transcript (Entrez)NM_018126
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)TMEM33
Cluster EST : UnigeneHs.31082 [ NCBI ]
CGAP (NCI)Hs.31082
Alternative Splicing GalleryENSG00000109133
Gene ExpressionTMEM33 [ NCBI-GEO ]   TMEM33 [ EBI - ARRAY_EXPRESS ]   TMEM33 [ SEEK ]   TMEM33 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55161
GTEX Portal (Tissue expression)TMEM33
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57088   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57088  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57088
Splice isoforms : SwissVarP57088
PhosPhoSitePlusP57088
Domains : Interpro (EBI)UPF0121   
Domain families : Pfam (Sanger)UPF0121 (PF03661)   
Domain families : Pfam (NCBI)pfam03661   
Conserved Domain (NCBI)TMEM33
DMDM Disease mutations55161
Blocks (Seattle)TMEM33
SuperfamilyP57088
Human Protein AtlasENSG00000109133
Peptide AtlasP57088
HPRD07680
IPIIPI00299084   IPI00966449   IPI00967533   IPI00966199   IPI00967865   
Protein Interaction databases
DIP (DOE-UCLA)P57088
IntAct (EBI)P57088
FunCoupENSG00000109133
BioGRIDTMEM33
STRING (EMBL)TMEM33
ZODIACTMEM33
Ontologies - Pathways
QuickGOP57088
Ontology : AmiGOnuclear pore  endoplasmic reticulum  biological_process  structural constituent of nuclear pore  cellular protein localization  melanosome  nuclear pore complex assembly  extracellular exosome  endoplasmic reticulum tubular network organization  
Ontology : EGO-EBInuclear pore  endoplasmic reticulum  biological_process  structural constituent of nuclear pore  cellular protein localization  melanosome  nuclear pore complex assembly  extracellular exosome  endoplasmic reticulum tubular network organization  
NDEx NetworkTMEM33
Atlas of Cancer Signalling NetworkTMEM33
Wikipedia pathwaysTMEM33
Orthology - Evolution
OrthoDB55161
GeneTree (enSembl)ENSG00000109133
Phylogenetic Trees/Animal Genes : TreeFamTMEM33
HOVERGENP57088
HOGENOMP57088
Homologs : HomoloGeneTMEM33
Homology/Alignments : Family Browser (UCSC)TMEM33
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM33
dbVarTMEM33
ClinVarTMEM33
1000_GenomesTMEM33 
Exome Variant ServerTMEM33
ExAC (Exome Aggregation Consortium)TMEM33 (select the gene name)
Genetic variants : HAPMAP55161
Genomic Variants (DGV)TMEM33 [DGVbeta]
DECIPHER (Syndromes)4:41937137-41962824  ENSG00000109133
CONAN: Copy Number AnalysisTMEM33 
Mutations
ICGC Data PortalTMEM33 
TCGA Data PortalTMEM33 
Broad Tumor PortalTMEM33
OASIS PortalTMEM33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM33
DgiDB (Drug Gene Interaction Database)TMEM33
DoCM (Curated mutations)TMEM33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM33 (select a term)
intoGenTMEM33
Cancer3DTMEM33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM33
Genetic Testing Registry TMEM33
NextProtP57088 [Medical]
TSGene55161
GENETestsTMEM33
Huge Navigator TMEM33 [HugePedia]
snp3D : Map Gene to Disease55161
BioCentury BCIQTMEM33
ClinGenTMEM33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55161
Chemical/Pharm GKB GenePA134963055
Clinical trialTMEM33
Miscellaneous
canSAR (ICR)TMEM33 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM33
EVEXTMEM33
GoPubMedTMEM33
iHOPTMEM33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:55 CET 2017

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