Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM33 (transmembrane protein 33)

Identity

Alias_symbol (synonym)FLJ10525
Other alias1600019D15Rik
SHINC-3
SHINC3
HGNC (Hugo) TMEM33
LocusID (NCBI) 55161
Atlas_Id 74934
Location 4p13  [Link to chromosome band 4p13]
Location_base_pair Starts at 41935120 and ends at 41960807 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM33 (4p13) / EIF3L (22q13.1)TMEM33 (4p13) / PILRB (7q22.1)TMEM33 (4p13) / TMEM33 (4p13)
TMEM33 (4p13) / ZNF451 (6p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM33   25541
Cards
Entrez_Gene (NCBI)TMEM33  55161  transmembrane protein 33
Aliases1600019D15Rik; SHINC-3; SHINC3
GeneCards (Weizmann)TMEM33
Ensembl hg19 (Hinxton)ENSG00000109133 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109133 [Gene_View]  chr4:41935120-41960807 [Contig_View]  TMEM33 [Vega]
ICGC DataPortalENSG00000109133
TCGA cBioPortalTMEM33
AceView (NCBI)TMEM33
Genatlas (Paris)TMEM33
WikiGenes55161
SOURCE (Princeton)TMEM33
Genetics Home Reference (NIH)TMEM33
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM33  -     chr4:41935120-41960807 +  4p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM33  -     4p13   [Description]    (hg19-Feb_2009)
EnsemblTMEM33 - 4p13 [CytoView hg19]  TMEM33 - 4p13 [CytoView hg38]
Mapping of homologs : NCBITMEM33 [Mapview hg19]  TMEM33 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF403224 AK001387 AK023062 AK024587 AK056974
RefSeq transcript (Entrez)NM_018126
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM33
Cluster EST : UnigeneHs.31082 [ NCBI ]
CGAP (NCI)Hs.31082
Alternative Splicing GalleryENSG00000109133
Gene ExpressionTMEM33 [ NCBI-GEO ]   TMEM33 [ EBI - ARRAY_EXPRESS ]   TMEM33 [ SEEK ]   TMEM33 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55161
GTEX Portal (Tissue expression)TMEM33
Human Protein AtlasENSG00000109133-TMEM33 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57088   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57088  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57088
Splice isoforms : SwissVarP57088
PhosPhoSitePlusP57088
Domains : Interpro (EBI)Per33/Pom33   
Domain families : Pfam (Sanger)UPF0121 (PF03661)   
Domain families : Pfam (NCBI)pfam03661   
Conserved Domain (NCBI)TMEM33
DMDM Disease mutations55161
Blocks (Seattle)TMEM33
SuperfamilyP57088
Human Protein Atlas [tissue]ENSG00000109133-TMEM33 [tissue]
Peptide AtlasP57088
HPRD07680
IPIIPI00299084   IPI00966449   IPI00967533   IPI00966199   IPI00967865   
Protein Interaction databases
DIP (DOE-UCLA)P57088
IntAct (EBI)P57088
FunCoupENSG00000109133
BioGRIDTMEM33
STRING (EMBL)TMEM33
ZODIACTMEM33
Ontologies - Pathways
QuickGOP57088
Ontology : AmiGOprotein binding  nuclear envelope  nuclear pore  endoplasmic reticulum  endoplasmic reticulum membrane  biological_process  structural constituent of nuclear pore  integral component of endoplasmic reticulum membrane  cellular protein localization  response to endoplasmic reticulum stress  melanosome  nuclear pore complex assembly  extracellular exosome  regulation of endoplasmic reticulum tubular network organization  positive regulation of IRE1-mediated unfolded protein response  positive regulation of PERK-mediated unfolded protein response  
Ontology : EGO-EBIprotein binding  nuclear envelope  nuclear pore  endoplasmic reticulum  endoplasmic reticulum membrane  biological_process  structural constituent of nuclear pore  integral component of endoplasmic reticulum membrane  cellular protein localization  response to endoplasmic reticulum stress  melanosome  nuclear pore complex assembly  extracellular exosome  regulation of endoplasmic reticulum tubular network organization  positive regulation of IRE1-mediated unfolded protein response  positive regulation of PERK-mediated unfolded protein response  
NDEx NetworkTMEM33
Atlas of Cancer Signalling NetworkTMEM33
Wikipedia pathwaysTMEM33
Orthology - Evolution
OrthoDB55161
GeneTree (enSembl)ENSG00000109133
Phylogenetic Trees/Animal Genes : TreeFamTMEM33
HOVERGENP57088
HOGENOMP57088
Homologs : HomoloGeneTMEM33
Homology/Alignments : Family Browser (UCSC)TMEM33
Gene fusions - Rearrangements
Fusion: Tumor Portal TMEM33
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM33
dbVarTMEM33
ClinVarTMEM33
1000_GenomesTMEM33 
Exome Variant ServerTMEM33
ExAC (Exome Aggregation Consortium)ENSG00000109133
GNOMAD BrowserENSG00000109133
Genetic variants : HAPMAP55161
Genomic Variants (DGV)TMEM33 [DGVbeta]
DECIPHERTMEM33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM33 
Mutations
ICGC Data PortalTMEM33 
TCGA Data PortalTMEM33 
Broad Tumor PortalTMEM33
OASIS PortalTMEM33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM33
DgiDB (Drug Gene Interaction Database)TMEM33
DoCM (Curated mutations)TMEM33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM33 (select a term)
intoGenTMEM33
Cancer3DTMEM33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM33
Genetic Testing Registry TMEM33
NextProtP57088 [Medical]
TSGene55161
GENETestsTMEM33
Target ValidationTMEM33
Huge Navigator TMEM33 [HugePedia]
snp3D : Map Gene to Disease55161
BioCentury BCIQTMEM33
ClinGenTMEM33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55161
Chemical/Pharm GKB GenePA134963055
Clinical trialTMEM33
Miscellaneous
canSAR (ICR)TMEM33 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM33
EVEXTMEM33
GoPubMedTMEM33
iHOPTMEM33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:33:11 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.