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TMEM38A (transmembrane protein 38A)

Identity

Alias_symbol (synonym)MGC3169
TRIC-A
Other aliasTRICA
HGNC (Hugo) TMEM38A
LocusID (NCBI) 79041
Atlas_Id 74937
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16771938 and ends at 16799816 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM38A (19p13.11) / CSNK1D (17q25.3)TMEM38A (19p13.11) / SNAPC1 (14q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM38A   28462
Cards
Entrez_Gene (NCBI)TMEM38A  79041  transmembrane protein 38A
AliasesTRIC-A; TRICA
GeneCards (Weizmann)TMEM38A
Ensembl hg19 (Hinxton) [Gene_View]  chr19:16771938-16799816 [Contig_View]  TMEM38A [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:16771938-16799816 [Contig_View]  TMEM38A [Vega]
TCGA cBioPortalTMEM38A
AceView (NCBI)TMEM38A
Genatlas (Paris)TMEM38A
WikiGenes79041
SOURCE (Princeton)TMEM38A
Genetics Home Reference (NIH)TMEM38A
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM38A  -     chr19:16771938-16799816 +  19p13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM38A  -     19p13.11   [Description]    (hg38-Dec_2013)
EnsemblTMEM38A - 19p13.11 [CytoView hg19]  TMEM38A - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBITMEM38A [Mapview hg19]  TMEM38A [Mapview hg38]
OMIM611235   
Gene and transcription
Genbank (Entrez)AK025981 AK292764 BC001195
RefSeq transcript (Entrez)NM_024074
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)TMEM38A
Cluster EST : UnigeneHs.436068 [ NCBI ]
CGAP (NCI)Hs.436068
Gene ExpressionTMEM38A [ NCBI-GEO ]   TMEM38A [ EBI - ARRAY_EXPRESS ]   TMEM38A [ SEEK ]   TMEM38A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM38A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79041
GTEX Portal (Tissue expression)TMEM38A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6F2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6F2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6F2
Splice isoforms : SwissVarQ9H6F2
PhosPhoSitePlusQ9H6F2
Domains : Interpro (EBI)TRIC_channel   
Domain families : Pfam (Sanger)TRIC (PF05197)   
Domain families : Pfam (NCBI)pfam05197   
Conserved Domain (NCBI)TMEM38A
DMDM Disease mutations79041
Blocks (Seattle)TMEM38A
SuperfamilyQ9H6F2
Peptide AtlasQ9H6F2
HPRD15537
IPIIPI00031641   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6F2
IntAct (EBI)Q9H6F2
BioGRIDTMEM38A
STRING (EMBL)TMEM38A
ZODIACTMEM38A
Ontologies - Pathways
QuickGOQ9H6F2
Ontology : AmiGOpotassium channel activity  integral component of membrane  nuclear membrane  sarcoplasmic reticulum membrane  extracellular exosome  potassium ion transmembrane transport  
Ontology : EGO-EBIpotassium channel activity  integral component of membrane  nuclear membrane  sarcoplasmic reticulum membrane  extracellular exosome  potassium ion transmembrane transport  
NDEx NetworkTMEM38A
Atlas of Cancer Signalling NetworkTMEM38A
Wikipedia pathwaysTMEM38A
Orthology - Evolution
OrthoDB79041
Phylogenetic Trees/Animal Genes : TreeFamTMEM38A
HOVERGENQ9H6F2
HOGENOMQ9H6F2
Homologs : HomoloGeneTMEM38A
Homology/Alignments : Family Browser (UCSC)TMEM38A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM38A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM38A
dbVarTMEM38A
ClinVarTMEM38A
1000_GenomesTMEM38A 
Exome Variant ServerTMEM38A
ExAC (Exome Aggregation Consortium)TMEM38A (select the gene name)
Genetic variants : HAPMAP79041
Genomic Variants (DGV)TMEM38A [DGVbeta]
DECIPHER (Syndromes)19:16771938-16799816  
CONAN: Copy Number AnalysisTMEM38A 
Mutations
ICGC Data PortalTMEM38A 
TCGA Data PortalTMEM38A 
Broad Tumor PortalTMEM38A
OASIS PortalTMEM38A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM38A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM38A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM38A
DgiDB (Drug Gene Interaction Database)TMEM38A
DoCM (Curated mutations)TMEM38A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM38A (select a term)
intoGenTMEM38A
Cancer3DTMEM38A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611235   
Orphanet
MedgenTMEM38A
Genetic Testing Registry TMEM38A
NextProtQ9H6F2 [Medical]
TSGene79041
GENETestsTMEM38A
Huge Navigator TMEM38A [HugePedia]
snp3D : Map Gene to Disease79041
BioCentury BCIQTMEM38A
ClinGenTMEM38A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79041
Chemical/Pharm GKB GenePA134891982
Clinical trialTMEM38A
Miscellaneous
canSAR (ICR)TMEM38A (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM38A
EVEXTMEM38A
GoPubMedTMEM38A
iHOPTMEM38A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:56 CET 2017

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