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TMEM38A (transmembrane protein 38A)

Identity

Alias (NCBI)TRIC-A
TRICA
HGNC (Hugo) TMEM38A
HGNC Alias symbMGC3169
TRIC-A
LocusID (NCBI) 79041
Atlas_Id 74937
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16661139 and ends at 16690023 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM38A (19p13.11) / CSNK1D (17q25.3)TMEM38A (19p13.11) / SNAPC1 (14q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM38A   28462
Cards
Entrez_Gene (NCBI)TMEM38A    transmembrane protein 38A
AliasesTRIC-A; TRICA
GeneCards (Weizmann)TMEM38A
Ensembl hg19 (Hinxton)ENSG00000072954 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000072954 [Gene_View]  ENSG00000072954 [Sequence]  chr19:16661139-16690023 [Contig_View]  TMEM38A [Vega]
ICGC DataPortalENSG00000072954
TCGA cBioPortalTMEM38A
AceView (NCBI)TMEM38A
Genatlas (Paris)TMEM38A
SOURCE (Princeton)TMEM38A
Genetics Home Reference (NIH)TMEM38A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM38A  -     chr19:16661139-16690023 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM38A  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathTMEM38A - 19p13.11 [CytoView hg19]  TMEM38A - 19p13.11 [CytoView hg38]
ImmunoBaseENSG00000072954
Genome Data Viewer NCBITMEM38A [Mapview hg19]  
OMIM611235   
Gene and transcription
Genbank (Entrez)AK025981 AK292764 BC001195 BM701710
RefSeq transcript (Entrez)NM_024074
Consensus coding sequences : CCDS (NCBI)TMEM38A
Gene ExpressionTMEM38A [ NCBI-GEO ]   TMEM38A [ EBI - ARRAY_EXPRESS ]   TMEM38A [ SEEK ]   TMEM38A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM38A [ Firebrowse - Broad ]
GenevisibleExpression of TMEM38A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79041
GTEX Portal (Tissue expression)TMEM38A
Human Protein AtlasENSG00000072954-TMEM38A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6F2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6F2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6F2
PhosPhoSitePlusQ9H6F2
Domains : Interpro (EBI)TRIC_channel   
Domain families : Pfam (Sanger)TRIC (PF05197)   
Domain families : Pfam (NCBI)pfam05197   
Conserved Domain (NCBI)TMEM38A
SuperfamilyQ9H6F2
AlphaFold pdb e-kbQ9H6F2   
Human Protein Atlas [tissue]ENSG00000072954-TMEM38A [tissue]
HPRD15537
Protein Interaction databases
DIP (DOE-UCLA)Q9H6F2
IntAct (EBI)Q9H6F2
BioGRIDTMEM38A
STRING (EMBL)TMEM38A
ZODIACTMEM38A
Ontologies - Pathways
QuickGOQ9H6F2
Ontology : AmiGOpotassium channel activity  endoplasmic reticulum organization  regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  integral component of membrane  nuclear membrane  sarcoplasmic reticulum membrane  identical protein binding  extracellular exosome  cellular response to caffeine  potassium ion transmembrane transport  
Ontology : EGO-EBIpotassium channel activity  endoplasmic reticulum organization  regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  integral component of membrane  nuclear membrane  sarcoplasmic reticulum membrane  identical protein binding  extracellular exosome  cellular response to caffeine  potassium ion transmembrane transport  
NDEx NetworkTMEM38A
Atlas of Cancer Signalling NetworkTMEM38A
Wikipedia pathwaysTMEM38A
Orthology - Evolution
OrthoDB79041
GeneTree (enSembl)ENSG00000072954
Phylogenetic Trees/Animal Genes : TreeFamTMEM38A
Homologs : HomoloGeneTMEM38A
Homology/Alignments : Family Browser (UCSC)TMEM38A
Gene fusions - Rearrangements
Fusion : QuiverTMEM38A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM38A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM38A
dbVarTMEM38A
ClinVarTMEM38A
MonarchTMEM38A
1000_GenomesTMEM38A 
Exome Variant ServerTMEM38A
GNOMAD BrowserENSG00000072954
Varsome BrowserTMEM38A
ACMGTMEM38A variants
VarityQ9H6F2
Genomic Variants (DGV)TMEM38A [DGVbeta]
DECIPHERTMEM38A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM38A 
Mutations
ICGC Data PortalTMEM38A 
TCGA Data PortalTMEM38A 
Broad Tumor PortalTMEM38A
OASIS PortalTMEM38A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM38A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM38A
Mutations and Diseases : HGMDTMEM38A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM38A
DgiDB (Drug Gene Interaction Database)TMEM38A
DoCM (Curated mutations)TMEM38A
CIViC (Clinical Interpretations of Variants in Cancer)TMEM38A
Cancer3DTMEM38A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611235   
Orphanet
DisGeNETTMEM38A
MedgenTMEM38A
Genetic Testing Registry TMEM38A
NextProtQ9H6F2 [Medical]
GENETestsTMEM38A
Target ValidationTMEM38A
Huge Navigator TMEM38A [HugePedia]
ClinGenTMEM38A
Clinical trials, drugs, therapy
MyCancerGenomeTMEM38A
Protein Interactions : CTDTMEM38A
Pharm GKB GenePA134891982
PharosQ9H6F2
Clinical trialTMEM38A
Miscellaneous
canSAR (ICR)TMEM38A
HarmonizomeTMEM38A
DataMed IndexTMEM38A
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM38A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:14 CEST 2021

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