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TMEM39A (transmembrane protein 39A)

Identity

Alias (NCBI)SUSR2
HGNC (Hugo) TMEM39A
HGNC Alias symbFLJ10902
LocusID (NCBI) 55254
Atlas_Id 74939
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 119428949 and ends at 119463615 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM39A (3q13.33) / BBX (3q13.12)TMEM39A (3q13.33) / EPHA6 (3q11.2)TMEM39A (3q13.33) / RPL22L1 (3q26.2)
TMEM39A BBXTMEM39A EPHA6

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM39A   25600
Cards
Entrez_Gene (NCBI)TMEM39A    transmembrane protein 39A
AliasesSUSR2
GeneCards (Weizmann)TMEM39A
Ensembl hg19 (Hinxton)ENSG00000176142 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176142 [Gene_View]  ENSG00000176142 [Sequence]  chr3:119428949-119463615 [Contig_View]  TMEM39A [Vega]
ICGC DataPortalENSG00000176142
TCGA cBioPortalTMEM39A
AceView (NCBI)TMEM39A
Genatlas (Paris)TMEM39A
SOURCE (Princeton)TMEM39A
Genetics Home Reference (NIH)TMEM39A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM39A  -     chr3:119428949-119463615 -  3q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM39A  -     3q13.33   [Description]    (hg19-Feb_2009)
GoldenPathTMEM39A - 3q13.33 [CytoView hg19]  TMEM39A - 3q13.33 [CytoView hg38]
ImmunoBaseENSG00000176142
Genome Data Viewer NCBITMEM39A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK001764 AK092064 AK222950 AK223248 BC003192
RefSeq transcript (Entrez)NM_018266
Consensus coding sequences : CCDS (NCBI)TMEM39A
Gene ExpressionTMEM39A [ NCBI-GEO ]   TMEM39A [ EBI - ARRAY_EXPRESS ]   TMEM39A [ SEEK ]   TMEM39A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM39A [ Firebrowse - Broad ]
GenevisibleExpression of TMEM39A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55254
GTEX Portal (Tissue expression)TMEM39A
Human Protein AtlasENSG00000176142-TMEM39A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NV64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NV64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NV64
PhosPhoSitePlusQ9NV64
Domains : Interpro (EBI)Uncharacterised_TMEM39   
Domain families : Pfam (Sanger)Tmp39 (PF10271)   
Domain families : Pfam (NCBI)pfam10271   
Conserved Domain (NCBI)TMEM39A
SuperfamilyQ9NV64
AlphaFold pdb e-kbQ9NV64   
Human Protein Atlas [tissue]ENSG00000176142-TMEM39A [tissue]
HPRD07713
Protein Interaction databases
DIP (DOE-UCLA)Q9NV64
IntAct (EBI)Q9NV64
BioGRIDTMEM39A
STRING (EMBL)TMEM39A
ZODIACTMEM39A
Ontologies - Pathways
QuickGOQ9NV64
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  autophagy  membrane  integral component of membrane  positive regulation of viral genome replication  negative regulation of autophagosome maturation  negative regulation of autophagosome maturation  negative regulation of autophagosome assembly  negative regulation of autophagosome assembly  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  autophagy  membrane  integral component of membrane  positive regulation of viral genome replication  negative regulation of autophagosome maturation  negative regulation of autophagosome maturation  negative regulation of autophagosome assembly  negative regulation of autophagosome assembly  
NDEx NetworkTMEM39A
Atlas of Cancer Signalling NetworkTMEM39A
Wikipedia pathwaysTMEM39A
Orthology - Evolution
OrthoDB55254
GeneTree (enSembl)ENSG00000176142
Phylogenetic Trees/Animal Genes : TreeFamTMEM39A
Homologs : HomoloGeneTMEM39A
Homology/Alignments : Family Browser (UCSC)TMEM39A
Gene fusions - Rearrangements
Fusion : QuiverTMEM39A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM39A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM39A
dbVarTMEM39A
ClinVarTMEM39A
MonarchTMEM39A
1000_GenomesTMEM39A 
Exome Variant ServerTMEM39A
GNOMAD BrowserENSG00000176142
Varsome BrowserTMEM39A
ACMGTMEM39A variants
VarityQ9NV64
Genomic Variants (DGV)TMEM39A [DGVbeta]
DECIPHERTMEM39A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM39A 
Mutations
ICGC Data PortalTMEM39A 
TCGA Data PortalTMEM39A 
Broad Tumor PortalTMEM39A
OASIS PortalTMEM39A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM39A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM39A
Mutations and Diseases : HGMDTMEM39A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM39A
DgiDB (Drug Gene Interaction Database)TMEM39A
DoCM (Curated mutations)TMEM39A
CIViC (Clinical Interpretations of Variants in Cancer)TMEM39A
Cancer3DTMEM39A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM39A
MedgenTMEM39A
Genetic Testing Registry TMEM39A
NextProtQ9NV64 [Medical]
GENETestsTMEM39A
Target ValidationTMEM39A
Huge Navigator TMEM39A [HugePedia]
ClinGenTMEM39A
Clinical trials, drugs, therapy
MyCancerGenomeTMEM39A
Protein Interactions : CTDTMEM39A
Pharm GKB GenePA134956032
PharosQ9NV64
Clinical trialTMEM39A
Miscellaneous
canSAR (ICR)TMEM39A
HarmonizomeTMEM39A
DataMed IndexTMEM39A
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM39A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:15 CEST 2021

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