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TMEM39A (transmembrane protein 39A)

Identity

Alias_symbol (synonym)FLJ10902
Other alias-
HGNC (Hugo) TMEM39A
LocusID (NCBI) 55254
Atlas_Id 74939
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 119147807 and ends at 119182529 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM39A (3q13.33) / BBX (3q13.12)TMEM39A (3q13.33) / EPHA6 (3q11.2)TMEM39A (3q13.33) / RPL22L1 (3q26.2)
TMEM39A BBXTMEM39A EPHA6

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM39A   25600
Cards
Entrez_Gene (NCBI)TMEM39A  55254  transmembrane protein 39A
Aliases
GeneCards (Weizmann)TMEM39A
Ensembl hg19 (Hinxton)ENSG00000176142 [Gene_View]  chr3:119147807-119182529 [Contig_View]  TMEM39A [Vega]
Ensembl hg38 (Hinxton)ENSG00000176142 [Gene_View]  chr3:119147807-119182529 [Contig_View]  TMEM39A [Vega]
ICGC DataPortalENSG00000176142
TCGA cBioPortalTMEM39A
AceView (NCBI)TMEM39A
Genatlas (Paris)TMEM39A
WikiGenes55254
SOURCE (Princeton)TMEM39A
Genetics Home Reference (NIH)TMEM39A
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM39A  -     chr3:119147807-119182529 -  3q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM39A  -     3q13.33   [Description]    (hg38-Dec_2013)
EnsemblTMEM39A - 3q13.33 [CytoView hg19]  TMEM39A - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBITMEM39A [Mapview hg19]  TMEM39A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001764 AK092064 AK222950 AK223248 BC003192
RefSeq transcript (Entrez)NM_018266
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)TMEM39A
Cluster EST : UnigeneHs.594171 [ NCBI ]
CGAP (NCI)Hs.594171
Alternative Splicing GalleryENSG00000176142
Gene ExpressionTMEM39A [ NCBI-GEO ]   TMEM39A [ EBI - ARRAY_EXPRESS ]   TMEM39A [ SEEK ]   TMEM39A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM39A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55254
GTEX Portal (Tissue expression)TMEM39A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NV64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NV64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NV64
Splice isoforms : SwissVarQ9NV64
PhosPhoSitePlusQ9NV64
Domains : Interpro (EBI)Uncharacterised_TMEM39   
Domain families : Pfam (Sanger)Tmp39 (PF10271)   
Domain families : Pfam (NCBI)pfam10271   
Conserved Domain (NCBI)TMEM39A
DMDM Disease mutations55254
Blocks (Seattle)TMEM39A
SuperfamilyQ9NV64
Human Protein AtlasENSG00000176142
Peptide AtlasQ9NV64
HPRD07713
IPIIPI00329181   IPI00867513   IPI00945595   IPI00946926   IPI00945077   IPI00946090   IPI00946318   IPI00947540   
Protein Interaction databases
DIP (DOE-UCLA)Q9NV64
IntAct (EBI)Q9NV64
FunCoupENSG00000176142
BioGRIDTMEM39A
STRING (EMBL)TMEM39A
ZODIACTMEM39A
Ontologies - Pathways
QuickGOQ9NV64
Ontology : AmiGOpositive regulation of defense response to virus by host  integral component of membrane  activation of mitophagy in response to mitochondrial depolarization  
Ontology : EGO-EBIpositive regulation of defense response to virus by host  integral component of membrane  activation of mitophagy in response to mitochondrial depolarization  
NDEx NetworkTMEM39A
Atlas of Cancer Signalling NetworkTMEM39A
Wikipedia pathwaysTMEM39A
Orthology - Evolution
OrthoDB55254
GeneTree (enSembl)ENSG00000176142
Phylogenetic Trees/Animal Genes : TreeFamTMEM39A
HOVERGENQ9NV64
HOGENOMQ9NV64
Homologs : HomoloGeneTMEM39A
Homology/Alignments : Family Browser (UCSC)TMEM39A
Gene fusions - Rearrangements
Fusion: TCGATMEM39A BBX
Fusion: TCGATMEM39A EPHA6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM39A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM39A
dbVarTMEM39A
ClinVarTMEM39A
1000_GenomesTMEM39A 
Exome Variant ServerTMEM39A
ExAC (Exome Aggregation Consortium)TMEM39A (select the gene name)
Genetic variants : HAPMAP55254
Genomic Variants (DGV)TMEM39A [DGVbeta]
DECIPHER (Syndromes)3:119147807-119182529  ENSG00000176142
CONAN: Copy Number AnalysisTMEM39A 
Mutations
ICGC Data PortalTMEM39A 
TCGA Data PortalTMEM39A 
Broad Tumor PortalTMEM39A
OASIS PortalTMEM39A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM39A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM39A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM39A
DgiDB (Drug Gene Interaction Database)TMEM39A
DoCM (Curated mutations)TMEM39A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM39A (select a term)
intoGenTMEM39A
Cancer3DTMEM39A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM39A
Genetic Testing Registry TMEM39A
NextProtQ9NV64 [Medical]
TSGene55254
GENETestsTMEM39A
Huge Navigator TMEM39A [HugePedia]
snp3D : Map Gene to Disease55254
BioCentury BCIQTMEM39A
ClinGenTMEM39A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55254
Chemical/Pharm GKB GenePA134956032
Clinical trialTMEM39A
Miscellaneous
canSAR (ICR)TMEM39A (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM39A
EVEXTMEM39A
GoPubMedTMEM39A
iHOPTMEM39A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:56 CET 2017

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