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TMEM39B (transmembrane protein 39B)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM39B
HGNC Alias symbFLJ10315
LocusID (NCBI) 55116
Atlas_Id 74940
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 32072939 and ends at 32102863 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SCGB3A1 (5q35.3) / TMEM39B (1p35.1)WDTC1 (1p36.11) / TMEM39B (1p35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM39B   25510
Cards
Entrez_Gene (NCBI)TMEM39B    transmembrane protein 39B
Aliases
GeneCards (Weizmann)TMEM39B
Ensembl hg19 (Hinxton)ENSG00000121775 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121775 [Gene_View]  ENSG00000121775 [Sequence]  chr1:32072939-32102863 [Contig_View]  TMEM39B [Vega]
ICGC DataPortalENSG00000121775
TCGA cBioPortalTMEM39B
AceView (NCBI)TMEM39B
Genatlas (Paris)TMEM39B
SOURCE (Princeton)TMEM39B
Genetics Home Reference (NIH)TMEM39B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM39B  -     chr1:32072939-32102863 +  1p35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM39B  -     1p35.2   [Description]    (hg19-Feb_2009)
GoldenPathTMEM39B - 1p35.2 [CytoView hg19]  TMEM39B - 1p35.2 [CytoView hg38]
ImmunoBaseENSG00000121775
Genome Data Viewer NCBITMEM39B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK001177 AK023331 AK055610 AK091861 AK296653
RefSeq transcript (Entrez)NM_001319677 NM_001319678 NM_001319679 NM_018056
Consensus coding sequences : CCDS (NCBI)TMEM39B
Gene ExpressionTMEM39B [ NCBI-GEO ]   TMEM39B [ EBI - ARRAY_EXPRESS ]   TMEM39B [ SEEK ]   TMEM39B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM39B [ Firebrowse - Broad ]
GenevisibleExpression of TMEM39B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55116
GTEX Portal (Tissue expression)TMEM39B
Human Protein AtlasENSG00000121775-TMEM39B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZU3
PhosPhoSitePlusQ9GZU3
Domains : Interpro (EBI)Uncharacterised_TMEM39   
Domain families : Pfam (Sanger)Tmp39 (PF10271)   
Domain families : Pfam (NCBI)pfam10271   
Conserved Domain (NCBI)TMEM39B
SuperfamilyQ9GZU3
AlphaFold pdb e-kbQ9GZU3   
Human Protein Atlas [tissue]ENSG00000121775-TMEM39B [tissue]
HPRD07662
Protein Interaction databases
DIP (DOE-UCLA)Q9GZU3
IntAct (EBI)Q9GZU3
BioGRIDTMEM39B
STRING (EMBL)TMEM39B
ZODIACTMEM39B
Ontologies - Pathways
QuickGOQ9GZU3
Ontology : AmiGObiological_process  membrane  integral component of membrane  
Ontology : EGO-EBIbiological_process  membrane  integral component of membrane  
NDEx NetworkTMEM39B
Atlas of Cancer Signalling NetworkTMEM39B
Wikipedia pathwaysTMEM39B
Orthology - Evolution
OrthoDB55116
GeneTree (enSembl)ENSG00000121775
Phylogenetic Trees/Animal Genes : TreeFamTMEM39B
Homologs : HomoloGeneTMEM39B
Homology/Alignments : Family Browser (UCSC)TMEM39B
Gene fusions - Rearrangements
Fusion : QuiverTMEM39B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM39B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM39B
dbVarTMEM39B
ClinVarTMEM39B
MonarchTMEM39B
1000_GenomesTMEM39B 
Exome Variant ServerTMEM39B
GNOMAD BrowserENSG00000121775
Varsome BrowserTMEM39B
ACMGTMEM39B variants
VarityQ9GZU3
Genomic Variants (DGV)TMEM39B [DGVbeta]
DECIPHERTMEM39B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM39B 
Mutations
ICGC Data PortalTMEM39B 
TCGA Data PortalTMEM39B 
Broad Tumor PortalTMEM39B
OASIS PortalTMEM39B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM39B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM39B
Mutations and Diseases : HGMDTMEM39B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM39B
DgiDB (Drug Gene Interaction Database)TMEM39B
DoCM (Curated mutations)TMEM39B
CIViC (Clinical Interpretations of Variants in Cancer)TMEM39B
Cancer3DTMEM39B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM39B
MedgenTMEM39B
Genetic Testing Registry TMEM39B
NextProtQ9GZU3 [Medical]
GENETestsTMEM39B
Target ValidationTMEM39B
Huge Navigator TMEM39B [HugePedia]
ClinGenTMEM39B
Clinical trials, drugs, therapy
MyCancerGenomeTMEM39B
Protein Interactions : CTDTMEM39B
Pharm GKB GenePA134933688
PharosQ9GZU3
Clinical trialTMEM39B
Miscellaneous
canSAR (ICR)TMEM39B
HarmonizomeTMEM39B
DataMed IndexTMEM39B
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM39B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:15 CEST 2021

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