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TMEM39B (transmembrane protein 39B)

Identity

Alias_symbol (synonym)FLJ10315
Other alias-
HGNC (Hugo) TMEM39B
LocusID (NCBI) 55116
Atlas_Id 74940
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 32538503 and ends at 32568467 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SCGB3A1 (5q35.3) / TMEM39B (1p35.1)WDTC1 (1p36.11) / TMEM39B (1p35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM39B   25510
Cards
Entrez_Gene (NCBI)TMEM39B  55116  transmembrane protein 39B
Aliases
GeneCards (Weizmann)TMEM39B
Ensembl hg19 (Hinxton)ENSG00000121775 [Gene_View]  chr1:32538503-32568467 [Contig_View]  TMEM39B [Vega]
Ensembl hg38 (Hinxton)ENSG00000121775 [Gene_View]  chr1:32538503-32568467 [Contig_View]  TMEM39B [Vega]
ICGC DataPortalENSG00000121775
TCGA cBioPortalTMEM39B
AceView (NCBI)TMEM39B
Genatlas (Paris)TMEM39B
WikiGenes55116
SOURCE (Princeton)TMEM39B
Genetics Home Reference (NIH)TMEM39B
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM39B  -     chr1:32538503-32568467 +  1p35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM39B  -     1p35.1   [Description]    (hg38-Dec_2013)
EnsemblTMEM39B - 1p35.1 [CytoView hg19]  TMEM39B - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBITMEM39B [Mapview hg19]  TMEM39B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001177 AK023331 AK055610 AK091861 AK296653
RefSeq transcript (Entrez)NM_018056
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)TMEM39B
Cluster EST : UnigeneHs.25544 [ NCBI ]
CGAP (NCI)Hs.25544
Alternative Splicing GalleryENSG00000121775
Gene ExpressionTMEM39B [ NCBI-GEO ]   TMEM39B [ EBI - ARRAY_EXPRESS ]   TMEM39B [ SEEK ]   TMEM39B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM39B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55116
GTEX Portal (Tissue expression)TMEM39B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZU3
Splice isoforms : SwissVarQ9GZU3
PhosPhoSitePlusQ9GZU3
Domains : Interpro (EBI)Uncharacterised_TMEM39   
Domain families : Pfam (Sanger)Tmp39 (PF10271)   
Domain families : Pfam (NCBI)pfam10271   
Conserved Domain (NCBI)TMEM39B
DMDM Disease mutations55116
Blocks (Seattle)TMEM39B
SuperfamilyQ9GZU3
Human Protein AtlasENSG00000121775
Peptide AtlasQ9GZU3
HPRD07662
IPIIPI00413263   IPI00909715   IPI00743710   IPI00908971   IPI00479335   IPI00916624   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZU3
IntAct (EBI)Q9GZU3
FunCoupENSG00000121775
BioGRIDTMEM39B
STRING (EMBL)TMEM39B
ZODIACTMEM39B
Ontologies - Pathways
QuickGOQ9GZU3
Ontology : AmiGOpositive regulation of defense response to virus by host  integral component of membrane  activation of mitophagy in response to mitochondrial depolarization  
Ontology : EGO-EBIpositive regulation of defense response to virus by host  integral component of membrane  activation of mitophagy in response to mitochondrial depolarization  
NDEx NetworkTMEM39B
Atlas of Cancer Signalling NetworkTMEM39B
Wikipedia pathwaysTMEM39B
Orthology - Evolution
OrthoDB55116
GeneTree (enSembl)ENSG00000121775
Phylogenetic Trees/Animal Genes : TreeFamTMEM39B
HOVERGENQ9GZU3
HOGENOMQ9GZU3
Homologs : HomoloGeneTMEM39B
Homology/Alignments : Family Browser (UCSC)TMEM39B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM39B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM39B
dbVarTMEM39B
ClinVarTMEM39B
1000_GenomesTMEM39B 
Exome Variant ServerTMEM39B
ExAC (Exome Aggregation Consortium)TMEM39B (select the gene name)
Genetic variants : HAPMAP55116
Genomic Variants (DGV)TMEM39B [DGVbeta]
DECIPHER (Syndromes)1:32538503-32568467  ENSG00000121775
CONAN: Copy Number AnalysisTMEM39B 
Mutations
ICGC Data PortalTMEM39B 
TCGA Data PortalTMEM39B 
Broad Tumor PortalTMEM39B
OASIS PortalTMEM39B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM39B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM39B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM39B
DgiDB (Drug Gene Interaction Database)TMEM39B
DoCM (Curated mutations)TMEM39B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM39B (select a term)
intoGenTMEM39B
Cancer3DTMEM39B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM39B
Genetic Testing Registry TMEM39B
NextProtQ9GZU3 [Medical]
TSGene55116
GENETestsTMEM39B
Huge Navigator TMEM39B [HugePedia]
snp3D : Map Gene to Disease55116
BioCentury BCIQTMEM39B
ClinGenTMEM39B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55116
Chemical/Pharm GKB GenePA134933688
Clinical trialTMEM39B
Miscellaneous
canSAR (ICR)TMEM39B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM39B
EVEXTMEM39B
GoPubMedTMEM39B
iHOPTMEM39B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:56 CET 2017

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