Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM40 (transmembrane protein 40)

Identity

Alias_symbol (synonym)FLJ11036
Other alias-
HGNC (Hugo) TMEM40
LocusID (NCBI) 55287
Atlas_Id 74941
Location 3p25.2  [Link to chromosome band 3p25]
Location_base_pair Starts at 12775029 and ends at 12810956 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KRI1 (19p13.2) / TMEM40 (3p25.2)RAF1 (3p25.2) / TMEM40 (3p25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM40   25620
Cards
Entrez_Gene (NCBI)TMEM40  55287  transmembrane protein 40
Aliases
GeneCards (Weizmann)TMEM40
Ensembl hg19 (Hinxton)ENSG00000088726 [Gene_View]  chr3:12775029-12810956 [Contig_View]  TMEM40 [Vega]
Ensembl hg38 (Hinxton)ENSG00000088726 [Gene_View]  chr3:12775029-12810956 [Contig_View]  TMEM40 [Vega]
ICGC DataPortalENSG00000088726
TCGA cBioPortalTMEM40
AceView (NCBI)TMEM40
Genatlas (Paris)TMEM40
WikiGenes55287
SOURCE (Princeton)TMEM40
Genetics Home Reference (NIH)TMEM40
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM40  -     chr3:12775029-12810956 -  3p25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM40  -     3p25.2   [Description]    (hg38-Dec_2013)
EnsemblTMEM40 - 3p25.2 [CytoView hg19]  TMEM40 - 3p25.2 [CytoView hg38]
Mapping of homologs : NCBITMEM40 [Mapview hg19]  TMEM40 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI452552 AK001898 AK092470 AK301984 BC020658
RefSeq transcript (Entrez)NM_001284406 NM_001284407 NM_001284408 NM_018306
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)TMEM40
Cluster EST : UnigeneHs.475502 [ NCBI ]
CGAP (NCI)Hs.475502
Alternative Splicing GalleryENSG00000088726
Gene ExpressionTMEM40 [ NCBI-GEO ]   TMEM40 [ EBI - ARRAY_EXPRESS ]   TMEM40 [ SEEK ]   TMEM40 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55287
GTEX Portal (Tissue expression)TMEM40
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWA1
Splice isoforms : SwissVarQ8WWA1
PhosPhoSitePlusQ8WWA1
Domains : Interpro (EBI)TMEM40   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM40
DMDM Disease mutations55287
Blocks (Seattle)TMEM40
SuperfamilyQ8WWA1
Human Protein AtlasENSG00000088726
Peptide AtlasQ8WWA1
HPRD08559
IPIIPI00940779   IPI00291738   IPI00168036   IPI00924598   IPI00926264   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWA1
IntAct (EBI)Q8WWA1
FunCoupENSG00000088726
BioGRIDTMEM40
STRING (EMBL)TMEM40
ZODIACTMEM40
Ontologies - Pathways
QuickGOQ8WWA1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM40
Atlas of Cancer Signalling NetworkTMEM40
Wikipedia pathwaysTMEM40
Orthology - Evolution
OrthoDB55287
GeneTree (enSembl)ENSG00000088726
Phylogenetic Trees/Animal Genes : TreeFamTMEM40
HOVERGENQ8WWA1
HOGENOMQ8WWA1
Homologs : HomoloGeneTMEM40
Homology/Alignments : Family Browser (UCSC)TMEM40
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM40
dbVarTMEM40
ClinVarTMEM40
1000_GenomesTMEM40 
Exome Variant ServerTMEM40
ExAC (Exome Aggregation Consortium)TMEM40 (select the gene name)
Genetic variants : HAPMAP55287
Genomic Variants (DGV)TMEM40 [DGVbeta]
DECIPHER (Syndromes)3:12775029-12810956  ENSG00000088726
CONAN: Copy Number AnalysisTMEM40 
Mutations
ICGC Data PortalTMEM40 
TCGA Data PortalTMEM40 
Broad Tumor PortalTMEM40
OASIS PortalTMEM40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM40
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM40
DgiDB (Drug Gene Interaction Database)TMEM40
DoCM (Curated mutations)TMEM40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM40 (select a term)
intoGenTMEM40
Cancer3DTMEM40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM40
Genetic Testing Registry TMEM40
NextProtQ8WWA1 [Medical]
TSGene55287
GENETestsTMEM40
Huge Navigator TMEM40 [HugePedia]
snp3D : Map Gene to Disease55287
BioCentury BCIQTMEM40
ClinGenTMEM40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55287
Chemical/Pharm GKB GenePA134940002
Clinical trialTMEM40
Miscellaneous
canSAR (ICR)TMEM40 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM40
EVEXTMEM40
GoPubMedTMEM40
iHOPTMEM40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:48:57 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.