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TMEM41A (transmembrane protein 41A)

Identity

Alias (NCBI)2900010K02Rik
HGNC (Hugo) TMEM41A
HGNC Alias symbMGC15397
LocusID (NCBI) 90407
Atlas_Id 57776
Location 3q27.2  [Link to chromosome band 3q27]
Location_base_pair Starts at 185489601 and ends at 185499035 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM41A   30544
Cards
Entrez_Gene (NCBI)TMEM41A    transmembrane protein 41A
Aliases2900010K02Rik
GeneCards (Weizmann)TMEM41A
Ensembl hg19 (Hinxton)ENSG00000163900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163900 [Gene_View]  ENSG00000163900 [Sequence]  chr3:185489601-185499035 [Contig_View]  TMEM41A [Vega]
ICGC DataPortalENSG00000163900
TCGA cBioPortalTMEM41A
AceView (NCBI)TMEM41A
Genatlas (Paris)TMEM41A
SOURCE (Princeton)TMEM41A
Genetics Home Reference (NIH)TMEM41A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM41A  -     chr3:185489601-185499035 -  3q27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM41A  -     3q27.2   [Description]    (hg19-Feb_2009)
GoldenPathTMEM41A - 3q27.2 [CytoView hg19]  TMEM41A - 3q27.2 [CytoView hg38]
ImmunoBaseENSG00000163900
Genome Data Viewer NCBITMEM41A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK172748 AK290878 AK313954 AL832782 AY358547
RefSeq transcript (Entrez)NM_080652
Consensus coding sequences : CCDS (NCBI)TMEM41A
Gene ExpressionTMEM41A [ NCBI-GEO ]   TMEM41A [ EBI - ARRAY_EXPRESS ]   TMEM41A [ SEEK ]   TMEM41A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM41A [ Firebrowse - Broad ]
GenevisibleExpression of TMEM41A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90407
GTEX Portal (Tissue expression)TMEM41A
Human Protein AtlasENSG00000163900-TMEM41A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HV5
PhosPhoSitePlusQ96HV5
Domains : Interpro (EBI)SNARE_assoc   
Domain families : Pfam (Sanger)SNARE_assoc (PF09335)   
Domain families : Pfam (NCBI)pfam09335   
Conserved Domain (NCBI)TMEM41A
SuperfamilyQ96HV5
AlphaFold pdb e-kbQ96HV5   
Human Protein Atlas [tissue]ENSG00000163900-TMEM41A [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q96HV5
IntAct (EBI)Q96HV5
BioGRIDTMEM41A
STRING (EMBL)TMEM41A
ZODIACTMEM41A
Ontologies - Pathways
QuickGOQ96HV5
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM41A
Atlas of Cancer Signalling NetworkTMEM41A
Wikipedia pathwaysTMEM41A
Orthology - Evolution
OrthoDB90407
GeneTree (enSembl)ENSG00000163900
Phylogenetic Trees/Animal Genes : TreeFamTMEM41A
Homologs : HomoloGeneTMEM41A
Homology/Alignments : Family Browser (UCSC)TMEM41A
Gene fusions - Rearrangements
Fusion : QuiverTMEM41A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM41A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM41A
dbVarTMEM41A
ClinVarTMEM41A
MonarchTMEM41A
1000_GenomesTMEM41A 
Exome Variant ServerTMEM41A
GNOMAD BrowserENSG00000163900
Varsome BrowserTMEM41A
ACMGTMEM41A variants
VarityQ96HV5
Genomic Variants (DGV)TMEM41A [DGVbeta]
DECIPHERTMEM41A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM41A 
Mutations
ICGC Data PortalTMEM41A 
TCGA Data PortalTMEM41A 
Broad Tumor PortalTMEM41A
OASIS PortalTMEM41A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM41A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM41A
Mutations and Diseases : HGMDTMEM41A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM41A
DgiDB (Drug Gene Interaction Database)TMEM41A
DoCM (Curated mutations)TMEM41A
CIViC (Clinical Interpretations of Variants in Cancer)TMEM41A
Cancer3DTMEM41A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM41A
MedgenTMEM41A
Genetic Testing Registry TMEM41A
NextProtQ96HV5 [Medical]
GENETestsTMEM41A
Target ValidationTMEM41A
Huge Navigator TMEM41A [HugePedia]
ClinGenTMEM41A
Clinical trials, drugs, therapy
MyCancerGenomeTMEM41A
Protein Interactions : CTDTMEM41A
Pharm GKB GenePA134873545
PharosQ96HV5
Clinical trialTMEM41A
Miscellaneous
canSAR (ICR)TMEM41A
HarmonizomeTMEM41A
DataMed IndexTMEM41A
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM41A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:31 CEST 2021

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