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TMEM41A (transmembrane protein 41A)

Identity

Alias_symbol (synonym)MGC15397
Other alias2900010K02Rik
HGNC (Hugo) TMEM41A
LocusID (NCBI) 90407
Atlas_Id 74942
Location 3q27.2  [Link to chromosome band 3q27]
Location_base_pair Starts at 185489601 and ends at 185499057 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM41A   30544
Cards
Entrez_Gene (NCBI)TMEM41A  90407  transmembrane protein 41A
Aliases2900010K02Rik
GeneCards (Weizmann)TMEM41A
Ensembl hg19 (Hinxton)ENSG00000163900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163900 [Gene_View]  chr3:185489601-185499057 [Contig_View]  TMEM41A [Vega]
ICGC DataPortalENSG00000163900
TCGA cBioPortalTMEM41A
AceView (NCBI)TMEM41A
Genatlas (Paris)TMEM41A
WikiGenes90407
SOURCE (Princeton)TMEM41A
Genetics Home Reference (NIH)TMEM41A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM41A  -     chr3:185489601-185499057 -  3q27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM41A  -     3q27.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM41A - 3q27.2 [CytoView hg19]  TMEM41A - 3q27.2 [CytoView hg38]
Mapping of homologs : NCBITMEM41A [Mapview hg19]  TMEM41A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK172748 AK290878 AK313954 AL832782 AY358547
RefSeq transcript (Entrez)NM_080652
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM41A
Cluster EST : UnigeneHs.692209 [ NCBI ]
CGAP (NCI)Hs.692209
Alternative Splicing GalleryENSG00000163900
Gene ExpressionTMEM41A [ NCBI-GEO ]   TMEM41A [ EBI - ARRAY_EXPRESS ]   TMEM41A [ SEEK ]   TMEM41A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM41A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90407
GTEX Portal (Tissue expression)TMEM41A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HV5
Splice isoforms : SwissVarQ96HV5
PhosPhoSitePlusQ96HV5
Domains : Interpro (EBI)SNARE_assoc   
Domain families : Pfam (Sanger)SNARE_assoc (PF09335)   
Domain families : Pfam (NCBI)pfam09335   
Conserved Domain (NCBI)TMEM41A
DMDM Disease mutations90407
Blocks (Seattle)TMEM41A
SuperfamilyQ96HV5
Human Protein AtlasENSG00000163900
Peptide AtlasQ96HV5
HPRD15539
IPIIPI00063334   IPI00441956   IPI00927443   
Protein Interaction databases
DIP (DOE-UCLA)Q96HV5
IntAct (EBI)Q96HV5
FunCoupENSG00000163900
BioGRIDTMEM41A
STRING (EMBL)TMEM41A
ZODIACTMEM41A
Ontologies - Pathways
QuickGOQ96HV5
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM41A
Atlas of Cancer Signalling NetworkTMEM41A
Wikipedia pathwaysTMEM41A
Orthology - Evolution
OrthoDB90407
GeneTree (enSembl)ENSG00000163900
Phylogenetic Trees/Animal Genes : TreeFamTMEM41A
HOVERGENQ96HV5
HOGENOMQ96HV5
Homologs : HomoloGeneTMEM41A
Homology/Alignments : Family Browser (UCSC)TMEM41A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM41A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM41A
dbVarTMEM41A
ClinVarTMEM41A
1000_GenomesTMEM41A 
Exome Variant ServerTMEM41A
ExAC (Exome Aggregation Consortium)TMEM41A (select the gene name)
Genetic variants : HAPMAP90407
Genomic Variants (DGV)TMEM41A [DGVbeta]
DECIPHERTMEM41A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM41A 
Mutations
ICGC Data PortalTMEM41A 
TCGA Data PortalTMEM41A 
Broad Tumor PortalTMEM41A
OASIS PortalTMEM41A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM41A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM41A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM41A
DgiDB (Drug Gene Interaction Database)TMEM41A
DoCM (Curated mutations)TMEM41A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM41A (select a term)
intoGenTMEM41A
Cancer3DTMEM41A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM41A
Genetic Testing Registry TMEM41A
NextProtQ96HV5 [Medical]
TSGene90407
GENETestsTMEM41A
Target ValidationTMEM41A
Huge Navigator TMEM41A [HugePedia]
snp3D : Map Gene to Disease90407
BioCentury BCIQTMEM41A
ClinGenTMEM41A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90407
Chemical/Pharm GKB GenePA134873545
Clinical trialTMEM41A
Miscellaneous
canSAR (ICR)TMEM41A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM41A
EVEXTMEM41A
GoPubMedTMEM41A
iHOPTMEM41A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:01 CEST 2017

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