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TMEM41B (transmembrane protein 41B)

Identity

Alias_symbol (synonym)KIAA0033
Other alias-
HGNC (Hugo) TMEM41B
LocusID (NCBI) 440026
Atlas_Id 74943
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 9295092 and ends at 9314768 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DENND5A (11p15.4) / TMEM41B (11p15.4)EIF4G2 (11p15.3) / TMEM41B (11p15.4)IPO7 (11p15.4) / TMEM41B (11p15.4)
TMEM41B (11p15.4) / SSU72 (1p36.33)TMEM41B (11p15.4) / TEKT1 (17p13.1)TMEM41B (11p15.4) / TMEM41B (11p15.4)
UBN2 (7q34) / TMEM41B (11p15.4)ZNF143 (11p15.4) / TMEM41B (11p15.4)IPO7 TMEM41B
ZNF143 TMEM41B

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM41B   28948
Cards
Entrez_Gene (NCBI)TMEM41B  440026  transmembrane protein 41B
Aliases
GeneCards (Weizmann)TMEM41B
Ensembl hg19 (Hinxton)ENSG00000166471 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166471 [Gene_View]  chr11:9295092-9314768 [Contig_View]  TMEM41B [Vega]
ICGC DataPortalENSG00000166471
TCGA cBioPortalTMEM41B
AceView (NCBI)TMEM41B
Genatlas (Paris)TMEM41B
WikiGenes440026
SOURCE (Princeton)TMEM41B
Genetics Home Reference (NIH)TMEM41B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM41B  -     chr11:9295092-9314768 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM41B  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblTMEM41B - 11p15.4 [CytoView hg19]  TMEM41B - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBITMEM41B [Mapview hg19]  TMEM41B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK303339 BC035034 BC044597 BC064366 BC091524
RefSeq transcript (Entrez)NM_001165030 NM_015012
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM41B
Cluster EST : UnigeneHs.731960 [ NCBI ]
CGAP (NCI)Hs.731960
Alternative Splicing GalleryENSG00000166471
Gene ExpressionTMEM41B [ NCBI-GEO ]   TMEM41B [ EBI - ARRAY_EXPRESS ]   TMEM41B [ SEEK ]   TMEM41B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM41B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440026
GTEX Portal (Tissue expression)TMEM41B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BJD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BJD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BJD5
Splice isoforms : SwissVarQ5BJD5
PhosPhoSitePlusQ5BJD5
Domains : Interpro (EBI)SNARE_assoc   
Domain families : Pfam (Sanger)SNARE_assoc (PF09335)   
Domain families : Pfam (NCBI)pfam09335   
Conserved Domain (NCBI)TMEM41B
DMDM Disease mutations440026
Blocks (Seattle)TMEM41B
SuperfamilyQ5BJD5
Human Protein AtlasENSG00000166471
Peptide AtlasQ5BJD5
HPRD18632
IPIIPI00555703   IPI00640739   IPI00978093   IPI00978643   
Protein Interaction databases
DIP (DOE-UCLA)Q5BJD5
IntAct (EBI)Q5BJD5
FunCoupENSG00000166471
BioGRIDTMEM41B
STRING (EMBL)TMEM41B
ZODIACTMEM41B
Ontologies - Pathways
QuickGOQ5BJD5
Ontology : AmiGOnervous system development  integral component of membrane  
Ontology : EGO-EBInervous system development  integral component of membrane  
NDEx NetworkTMEM41B
Atlas of Cancer Signalling NetworkTMEM41B
Wikipedia pathwaysTMEM41B
Orthology - Evolution
OrthoDB440026
GeneTree (enSembl)ENSG00000166471
Phylogenetic Trees/Animal Genes : TreeFamTMEM41B
HOVERGENQ5BJD5
HOGENOMQ5BJD5
Homologs : HomoloGeneTMEM41B
Homology/Alignments : Family Browser (UCSC)TMEM41B
Gene fusions - Rearrangements
Fusion: TCGAIPO7 TMEM41B
Fusion: TCGAZNF143 TMEM41B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM41B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM41B
dbVarTMEM41B
ClinVarTMEM41B
1000_GenomesTMEM41B 
Exome Variant ServerTMEM41B
ExAC (Exome Aggregation Consortium)TMEM41B (select the gene name)
Genetic variants : HAPMAP440026
Genomic Variants (DGV)TMEM41B [DGVbeta]
DECIPHERTMEM41B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM41B 
Mutations
ICGC Data PortalTMEM41B 
TCGA Data PortalTMEM41B 
Broad Tumor PortalTMEM41B
OASIS PortalTMEM41B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM41B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM41B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM41B
DgiDB (Drug Gene Interaction Database)TMEM41B
DoCM (Curated mutations)TMEM41B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM41B (select a term)
intoGenTMEM41B
Cancer3DTMEM41B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM41B
Genetic Testing Registry TMEM41B
NextProtQ5BJD5 [Medical]
TSGene440026
GENETestsTMEM41B
Target ValidationTMEM41B
Huge Navigator TMEM41B [HugePedia]
snp3D : Map Gene to Disease440026
BioCentury BCIQTMEM41B
ClinGenTMEM41B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440026
Chemical/Pharm GKB GenePA134898265
Clinical trialTMEM41B
Miscellaneous
canSAR (ICR)TMEM41B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM41B
EVEXTMEM41B
GoPubMedTMEM41B
iHOPTMEM41B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:01 CEST 2017

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