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TMEM42 (transmembrane protein 42)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM42
HGNC Alias symbMGC29956
LocusID (NCBI) 131616
Atlas_Id 74944
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44861912 and ends at 44865662 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM42   28444
Cards
Entrez_Gene (NCBI)TMEM42    transmembrane protein 42
Aliases
GeneCards (Weizmann)TMEM42
Ensembl hg19 (Hinxton)ENSG00000169964 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169964 [Gene_View]  ENSG00000169964 [Sequence]  chr3:44861912-44865662 [Contig_View]  TMEM42 [Vega]
ICGC DataPortalENSG00000169964
TCGA cBioPortalTMEM42
AceView (NCBI)TMEM42
Genatlas (Paris)TMEM42
SOURCE (Princeton)TMEM42
Genetics Home Reference (NIH)TMEM42
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM42  -     chr3:44861912-44865662 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM42  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathTMEM42 - 3p21.31 [CytoView hg19]  TMEM42 - 3p21.31 [CytoView hg38]
ImmunoBaseENSG00000169964
Genome Data Viewer NCBITMEM42 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AL532443 AL834253 BC019851 BX103899 DB499198
RefSeq transcript (Entrez)NM_144638
Consensus coding sequences : CCDS (NCBI)TMEM42
Gene ExpressionTMEM42 [ NCBI-GEO ]   TMEM42 [ EBI - ARRAY_EXPRESS ]   TMEM42 [ SEEK ]   TMEM42 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM42 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM42 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131616
GTEX Portal (Tissue expression)TMEM42
Human Protein AtlasENSG00000169964-TMEM42 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YG0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YG0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YG0
PhosPhoSitePlusQ69YG0
Domains : Interpro (EBI)TMEM42   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM42
SuperfamilyQ69YG0
AlphaFold pdb e-kbQ69YG0   
Human Protein Atlas [tissue]ENSG00000169964-TMEM42 [tissue]
HPRD15540
Protein Interaction databases
DIP (DOE-UCLA)Q69YG0
IntAct (EBI)Q69YG0
BioGRIDTMEM42
STRING (EMBL)TMEM42
ZODIACTMEM42
Ontologies - Pathways
QuickGOQ69YG0
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM42
Atlas of Cancer Signalling NetworkTMEM42
Wikipedia pathwaysTMEM42
Orthology - Evolution
OrthoDB131616
GeneTree (enSembl)ENSG00000169964
Phylogenetic Trees/Animal Genes : TreeFamTMEM42
Homologs : HomoloGeneTMEM42
Homology/Alignments : Family Browser (UCSC)TMEM42
Gene fusions - Rearrangements
Fusion : QuiverTMEM42
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM42
dbVarTMEM42
ClinVarTMEM42
MonarchTMEM42
1000_GenomesTMEM42 
Exome Variant ServerTMEM42
GNOMAD BrowserENSG00000169964
Varsome BrowserTMEM42
ACMGTMEM42 variants
VarityQ69YG0
Genomic Variants (DGV)TMEM42 [DGVbeta]
DECIPHERTMEM42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM42 
Mutations
ICGC Data PortalTMEM42 
TCGA Data PortalTMEM42 
Broad Tumor PortalTMEM42
OASIS PortalTMEM42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM42  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM42
Mutations and Diseases : HGMDTMEM42
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM42
DgiDB (Drug Gene Interaction Database)TMEM42
DoCM (Curated mutations)TMEM42
CIViC (Clinical Interpretations of Variants in Cancer)TMEM42
Cancer3DTMEM42
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM42
MedgenTMEM42
Genetic Testing Registry TMEM42
NextProtQ69YG0 [Medical]
GENETestsTMEM42
Target ValidationTMEM42
Huge Navigator TMEM42 [HugePedia]
ClinGenTMEM42
Clinical trials, drugs, therapy
MyCancerGenomeTMEM42
Protein Interactions : CTDTMEM42
Pharm GKB GenePA134914008
PharosQ69YG0
Clinical trialTMEM42
Miscellaneous
canSAR (ICR)TMEM42
HarmonizomeTMEM42
DataMed IndexTMEM42
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:15 CEST 2021

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