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TMEM42 (transmembrane protein 42)

Identity

Alias_symbol (synonym)MGC29956
Other alias-
HGNC (Hugo) TMEM42
LocusID (NCBI) 131616
Atlas_Id 74944
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44861909 and ends at 44865667 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM42   28444
Cards
Entrez_Gene (NCBI)TMEM42  131616  transmembrane protein 42
Aliases
GeneCards (Weizmann)TMEM42
Ensembl hg19 (Hinxton)ENSG00000169964 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169964 [Gene_View]  chr3:44861909-44865667 [Contig_View]  TMEM42 [Vega]
ICGC DataPortalENSG00000169964
TCGA cBioPortalTMEM42
AceView (NCBI)TMEM42
Genatlas (Paris)TMEM42
WikiGenes131616
SOURCE (Princeton)TMEM42
Genetics Home Reference (NIH)TMEM42
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM42  -     chr3:44861909-44865667 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM42  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblTMEM42 - 3p21.31 [CytoView hg19]  TMEM42 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBITMEM42 [Mapview hg19]  TMEM42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL532443 AL834253 BC019851 BX103899 DB499198
RefSeq transcript (Entrez)NM_144638
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM42
Cluster EST : UnigeneHs.646856 [ NCBI ]
CGAP (NCI)Hs.646856
Alternative Splicing GalleryENSG00000169964
Gene ExpressionTMEM42 [ NCBI-GEO ]   TMEM42 [ EBI - ARRAY_EXPRESS ]   TMEM42 [ SEEK ]   TMEM42 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131616
GTEX Portal (Tissue expression)TMEM42
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YG0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YG0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YG0
Splice isoforms : SwissVarQ69YG0
PhosPhoSitePlusQ69YG0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM42
DMDM Disease mutations131616
Blocks (Seattle)TMEM42
SuperfamilyQ69YG0
Human Protein AtlasENSG00000169964
Peptide AtlasQ69YG0
HPRD15540
IPIIPI00102978   
Protein Interaction databases
DIP (DOE-UCLA)Q69YG0
IntAct (EBI)Q69YG0
FunCoupENSG00000169964
BioGRIDTMEM42
STRING (EMBL)TMEM42
ZODIACTMEM42
Ontologies - Pathways
QuickGOQ69YG0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM42
Atlas of Cancer Signalling NetworkTMEM42
Wikipedia pathwaysTMEM42
Orthology - Evolution
OrthoDB131616
GeneTree (enSembl)ENSG00000169964
Phylogenetic Trees/Animal Genes : TreeFamTMEM42
HOVERGENQ69YG0
HOGENOMQ69YG0
Homologs : HomoloGeneTMEM42
Homology/Alignments : Family Browser (UCSC)TMEM42
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM42
dbVarTMEM42
ClinVarTMEM42
1000_GenomesTMEM42 
Exome Variant ServerTMEM42
ExAC (Exome Aggregation Consortium)TMEM42 (select the gene name)
Genetic variants : HAPMAP131616
Genomic Variants (DGV)TMEM42 [DGVbeta]
DECIPHERTMEM42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM42 
Mutations
ICGC Data PortalTMEM42 
TCGA Data PortalTMEM42 
Broad Tumor PortalTMEM42
OASIS PortalTMEM42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM42
DgiDB (Drug Gene Interaction Database)TMEM42
DoCM (Curated mutations)TMEM42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM42 (select a term)
intoGenTMEM42
Cancer3DTMEM42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM42
Genetic Testing Registry TMEM42
NextProtQ69YG0 [Medical]
TSGene131616
GENETestsTMEM42
Target ValidationTMEM42
Huge Navigator TMEM42 [HugePedia]
snp3D : Map Gene to Disease131616
BioCentury BCIQTMEM42
ClinGenTMEM42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131616
Chemical/Pharm GKB GenePA134914008
Clinical trialTMEM42
Miscellaneous
canSAR (ICR)TMEM42 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM42
EVEXTMEM42
GoPubMedTMEM42
iHOPTMEM42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:46:22 CEST 2017

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