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TMEM44 (transmembrane protein 44)

Identity

Alias_symbol (synonym)DKFZp686O18124
Other alias-
HGNC (Hugo) TMEM44
LocusID (NCBI) 93109
Atlas_Id 74946
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 194308402 and ends at 194354150 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM44 (3q29) / LSG1 (3q29)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM44   25120
Cards
Entrez_Gene (NCBI)TMEM44  93109  transmembrane protein 44
Aliases
GeneCards (Weizmann)TMEM44
Ensembl hg19 (Hinxton)ENSG00000145014 [Gene_View]  chr3:194308402-194354150 [Contig_View]  TMEM44 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145014 [Gene_View]  chr3:194308402-194354150 [Contig_View]  TMEM44 [Vega]
ICGC DataPortalENSG00000145014
TCGA cBioPortalTMEM44
AceView (NCBI)TMEM44
Genatlas (Paris)TMEM44
WikiGenes93109
SOURCE (Princeton)TMEM44
Genetics Home Reference (NIH)TMEM44
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM44  -     chr3:194308402-194354150 -  3q29   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM44  -     3q29   [Description]    (hg38-Dec_2013)
EnsemblTMEM44 - 3q29 [CytoView hg19]  TMEM44 - 3q29 [CytoView hg38]
Mapping of homologs : NCBITMEM44 [Mapview hg19]  TMEM44 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI640920 AK126914 AL547748 AL833026 AY303778
RefSeq transcript (Entrez)NM_001011655 NM_001166305 NM_001166306 NM_138399
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929312
Consensus coding sequences : CCDS (NCBI)TMEM44
Cluster EST : UnigeneHs.478729 [ NCBI ]
CGAP (NCI)Hs.478729
Alternative Splicing GalleryENSG00000145014
Gene ExpressionTMEM44 [ NCBI-GEO ]   TMEM44 [ EBI - ARRAY_EXPRESS ]   TMEM44 [ SEEK ]   TMEM44 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93109
GTEX Portal (Tissue expression)TMEM44
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2T9K0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2T9K0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2T9K0
Splice isoforms : SwissVarQ2T9K0
PhosPhoSitePlusQ2T9K0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM44
DMDM Disease mutations93109
Blocks (Seattle)TMEM44
SuperfamilyQ2T9K0
Human Protein AtlasENSG00000145014
Peptide AtlasQ2T9K0
HPRD14297
IPIIPI00843989   IPI00789540   IPI00063388   IPI00418919   IPI01009922   IPI00217591   IPI00927822   IPI00924540   IPI00924794   IPI00925020   
Protein Interaction databases
DIP (DOE-UCLA)Q2T9K0
IntAct (EBI)Q2T9K0
FunCoupENSG00000145014
BioGRIDTMEM44
STRING (EMBL)TMEM44
ZODIACTMEM44
Ontologies - Pathways
QuickGOQ2T9K0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM44
Atlas of Cancer Signalling NetworkTMEM44
Wikipedia pathwaysTMEM44
Orthology - Evolution
OrthoDB93109
GeneTree (enSembl)ENSG00000145014
Phylogenetic Trees/Animal Genes : TreeFamTMEM44
HOVERGENQ2T9K0
HOGENOMQ2T9K0
Homologs : HomoloGeneTMEM44
Homology/Alignments : Family Browser (UCSC)TMEM44
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM44
dbVarTMEM44
ClinVarTMEM44
1000_GenomesTMEM44 
Exome Variant ServerTMEM44
ExAC (Exome Aggregation Consortium)TMEM44 (select the gene name)
Genetic variants : HAPMAP93109
Genomic Variants (DGV)TMEM44 [DGVbeta]
DECIPHER (Syndromes)3:194308402-194354150  ENSG00000145014
CONAN: Copy Number AnalysisTMEM44 
Mutations
ICGC Data PortalTMEM44 
TCGA Data PortalTMEM44 
Broad Tumor PortalTMEM44
OASIS PortalTMEM44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM44
DgiDB (Drug Gene Interaction Database)TMEM44
DoCM (Curated mutations)TMEM44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM44 (select a term)
intoGenTMEM44
Cancer3DTMEM44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM44
Genetic Testing Registry TMEM44
NextProtQ2T9K0 [Medical]
TSGene93109
GENETestsTMEM44
Huge Navigator TMEM44 [HugePedia]
snp3D : Map Gene to Disease93109
BioCentury BCIQTMEM44
ClinGenTMEM44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93109
Chemical/Pharm GKB GenePA134916107
Clinical trialTMEM44
Miscellaneous
canSAR (ICR)TMEM44 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM44
EVEXTMEM44
GoPubMedTMEM44
iHOPTMEM44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:58 CET 2017

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