Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM45A (transmembrane protein 45A)

Identity

Alias (NCBI)DERP7
DNAPTP4
HGNC (Hugo) TMEM45A
HGNC Alias symbFLJ10134
DERP7
LocusID (NCBI) 55076
Atlas_Id 53361
Location 3q12.2  [Link to chromosome band 3q12]
Location_base_pair Starts at 100492619 and ends at 100577444 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MKKS (20p12.2) / TMEM45A (3q12.2)TMEM45A (3q12.2) / CMSS1 (3q12.1)TMEM45A 3q12.2 C3orf26

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM45A   25480
Cards
Entrez_Gene (NCBI)TMEM45A    transmembrane protein 45A
AliasesDERP7; DNAPTP4
GeneCards (Weizmann)TMEM45A
Ensembl hg19 (Hinxton)ENSG00000181458 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181458 [Gene_View]  ENSG00000181458 [Sequence]  chr3:100492619-100577444 [Contig_View]  TMEM45A [Vega]
ICGC DataPortalENSG00000181458
TCGA cBioPortalTMEM45A
AceView (NCBI)TMEM45A
Genatlas (Paris)TMEM45A
SOURCE (Princeton)TMEM45A
Genetics Home Reference (NIH)TMEM45A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM45A  -     chr3:100492619-100577444 +  3q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM45A  -     3q12.2   [Description]    (hg19-Feb_2009)
GoldenPathTMEM45A - 3q12.2 [CytoView hg19]  TMEM45A - 3q12.2 [CytoView hg38]
ImmunoBaseENSG00000181458
Genome Data Viewer NCBITMEM45A [Mapview hg19]  
OMIM616928   
Gene and transcription
Genbank (Entrez)AB013911 AK000996 AK129789 AY450392 BC040355
RefSeq transcript (Entrez)NM_001363876 NM_018004
Consensus coding sequences : CCDS (NCBI)TMEM45A
Gene ExpressionTMEM45A [ NCBI-GEO ]   TMEM45A [ EBI - ARRAY_EXPRESS ]   TMEM45A [ SEEK ]   TMEM45A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM45A [ Firebrowse - Broad ]
GenevisibleExpression of TMEM45A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55076
GTEX Portal (Tissue expression)TMEM45A
Human Protein AtlasENSG00000181458-TMEM45A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWC5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWC5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWC5
PhosPhoSitePlusQ9NWC5
Domains : Interpro (EBI)DUF716    TMEM45   
Domain families : Pfam (Sanger)DUF716 (PF04819)   
Domain families : Pfam (NCBI)pfam04819   
Conserved Domain (NCBI)TMEM45A
SuperfamilyQ9NWC5
AlphaFold pdb e-kbQ9NWC5   
Human Protein Atlas [tissue]ENSG00000181458-TMEM45A [tissue]
HPRD07647
Protein Interaction databases
DIP (DOE-UCLA)Q9NWC5
IntAct (EBI)Q9NWC5
BioGRIDTMEM45A
STRING (EMBL)TMEM45A
ZODIACTMEM45A
Ontologies - Pathways
QuickGOQ9NWC5
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM45A
Atlas of Cancer Signalling NetworkTMEM45A
Wikipedia pathwaysTMEM45A
Orthology - Evolution
OrthoDB55076
GeneTree (enSembl)ENSG00000181458
Phylogenetic Trees/Animal Genes : TreeFamTMEM45A
Homologs : HomoloGeneTMEM45A
Homology/Alignments : Family Browser (UCSC)TMEM45A
Gene fusions - Rearrangements
Fusion : MitelmanTMEM45A/CMSS1 [3q12.2/3q12.1]  
Fusion : QuiverTMEM45A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM45A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM45A
dbVarTMEM45A
ClinVarTMEM45A
MonarchTMEM45A
1000_GenomesTMEM45A 
Exome Variant ServerTMEM45A
GNOMAD BrowserENSG00000181458
Varsome BrowserTMEM45A
ACMGTMEM45A variants
VarityQ9NWC5
Genomic Variants (DGV)TMEM45A [DGVbeta]
DECIPHERTMEM45A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM45A 
Mutations
ICGC Data PortalTMEM45A 
TCGA Data PortalTMEM45A 
Broad Tumor PortalTMEM45A
OASIS PortalTMEM45A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM45A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM45A
Mutations and Diseases : HGMDTMEM45A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM45A
DgiDB (Drug Gene Interaction Database)TMEM45A
DoCM (Curated mutations)TMEM45A
CIViC (Clinical Interpretations of Variants in Cancer)TMEM45A
Cancer3DTMEM45A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616928   
Orphanet
DisGeNETTMEM45A
MedgenTMEM45A
Genetic Testing Registry TMEM45A
NextProtQ9NWC5 [Medical]
GENETestsTMEM45A
Target ValidationTMEM45A
Huge Navigator TMEM45A [HugePedia]
ClinGenTMEM45A
Clinical trials, drugs, therapy
MyCancerGenomeTMEM45A
Protein Interactions : CTDTMEM45A
Pharm GKB GenePA134868262
PharosQ9NWC5
Clinical trialTMEM45A
Miscellaneous
canSAR (ICR)TMEM45A
HarmonizomeTMEM45A
DataMed IndexTMEM45A
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM45A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:35:32 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.