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TMEM45A (transmembrane protein 45A)

Identity

Alias_symbol (synonym)FLJ10134
DERP7
Other alias
HGNC (Hugo) TMEM45A
LocusID (NCBI) 55076
Atlas_Id 53361
Location 3q12.2  [Link to chromosome band 3q12]
Location_base_pair Starts at 100211463 and ends at 100296296 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MKKS (20p12.2) / TMEM45A (3q12.2)TMEM45A (3q12.2) / CMSS1 (3q12.1)TMEM45A 3q12.2 C3orf26

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM45A   25480
Cards
Entrez_Gene (NCBI)TMEM45A  55076  transmembrane protein 45A
AliasesDERP7
GeneCards (Weizmann)TMEM45A
Ensembl hg19 (Hinxton)ENSG00000181458 [Gene_View]  chr3:100211463-100296296 [Contig_View]  TMEM45A [Vega]
Ensembl hg38 (Hinxton)ENSG00000181458 [Gene_View]  chr3:100211463-100296296 [Contig_View]  TMEM45A [Vega]
ICGC DataPortalENSG00000181458
TCGA cBioPortalTMEM45A
AceView (NCBI)TMEM45A
Genatlas (Paris)TMEM45A
WikiGenes55076
SOURCE (Princeton)TMEM45A
Genetics Home Reference (NIH)TMEM45A
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM45A  -     chr3:100211463-100296296 +  3q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM45A  -     3q12.2   [Description]    (hg38-Dec_2013)
EnsemblTMEM45A - 3q12.2 [CytoView hg19]  TMEM45A - 3q12.2 [CytoView hg38]
Mapping of homologs : NCBITMEM45A [Mapview hg19]  TMEM45A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB013911 AK000996 AK129789 AY450392 BC040355
RefSeq transcript (Entrez)NM_018004
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)TMEM45A
Cluster EST : UnigeneHs.658956 [ NCBI ]
CGAP (NCI)Hs.658956
Alternative Splicing GalleryENSG00000181458
Gene ExpressionTMEM45A [ NCBI-GEO ]   TMEM45A [ EBI - ARRAY_EXPRESS ]   TMEM45A [ SEEK ]   TMEM45A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM45A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55076
GTEX Portal (Tissue expression)TMEM45A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWC5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWC5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWC5
Splice isoforms : SwissVarQ9NWC5
PhosPhoSitePlusQ9NWC5
Domains : Interpro (EBI)DUF716_TMEM45   
Domain families : Pfam (Sanger)DUF716 (PF04819)   
Domain families : Pfam (NCBI)pfam04819   
Conserved Domain (NCBI)TMEM45A
DMDM Disease mutations55076
Blocks (Seattle)TMEM45A
SuperfamilyQ9NWC5
Human Protein AtlasENSG00000181458
Peptide AtlasQ9NWC5
HPRD07647
IPIIPI00017523   IPI00788618   IPI00879736   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWC5
IntAct (EBI)Q9NWC5
FunCoupENSG00000181458
BioGRIDTMEM45A
STRING (EMBL)TMEM45A
ZODIACTMEM45A
Ontologies - Pathways
QuickGOQ9NWC5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM45A
Atlas of Cancer Signalling NetworkTMEM45A
Wikipedia pathwaysTMEM45A
Orthology - Evolution
OrthoDB55076
GeneTree (enSembl)ENSG00000181458
Phylogenetic Trees/Animal Genes : TreeFamTMEM45A
HOVERGENQ9NWC5
HOGENOMQ9NWC5
Homologs : HomoloGeneTMEM45A
Homology/Alignments : Family Browser (UCSC)TMEM45A
Gene fusions - Rearrangements
Fusion : MitelmanTMEM45A/CMSS1 [3q12.2/3q12.1]  
Fusion: TCGATMEM45A 3q12.2 C3orf26 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM45A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM45A
dbVarTMEM45A
ClinVarTMEM45A
1000_GenomesTMEM45A 
Exome Variant ServerTMEM45A
ExAC (Exome Aggregation Consortium)TMEM45A (select the gene name)
Genetic variants : HAPMAP55076
Genomic Variants (DGV)TMEM45A [DGVbeta]
DECIPHER (Syndromes)3:100211463-100296296  ENSG00000181458
CONAN: Copy Number AnalysisTMEM45A 
Mutations
ICGC Data PortalTMEM45A 
TCGA Data PortalTMEM45A 
Broad Tumor PortalTMEM45A
OASIS PortalTMEM45A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM45A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM45A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM45A
DgiDB (Drug Gene Interaction Database)TMEM45A
DoCM (Curated mutations)TMEM45A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM45A (select a term)
intoGenTMEM45A
Cancer3DTMEM45A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM45A
Genetic Testing Registry TMEM45A
NextProtQ9NWC5 [Medical]
TSGene55076
GENETestsTMEM45A
Huge Navigator TMEM45A [HugePedia]
snp3D : Map Gene to Disease55076
BioCentury BCIQTMEM45A
ClinGenTMEM45A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55076
Chemical/Pharm GKB GenePA134868262
Clinical trialTMEM45A
Miscellaneous
canSAR (ICR)TMEM45A (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM45A
EVEXTMEM45A
GoPubMedTMEM45A
iHOPTMEM45A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:31:30 CET 2017

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