Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM45B (transmembrane protein 45B)

Identity

Alias_symbol (synonym)BC016153
FLJ40787
Other alias-
HGNC (Hugo) TMEM45B
LocusID (NCBI) 120224
Atlas_Id 74948
Location 11q24.3  [Link to chromosome band 11q24]
Location_base_pair Starts at 129685741 and ends at 129729898 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FRMD4A (10p13) / TMEM45B (11q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM45B   25194
Cards
Entrez_Gene (NCBI)TMEM45B  120224  transmembrane protein 45B
Aliases
GeneCards (Weizmann)TMEM45B
Ensembl hg19 (Hinxton)ENSG00000151715 [Gene_View]  chr11:129685741-129729898 [Contig_View]  TMEM45B [Vega]
Ensembl hg38 (Hinxton)ENSG00000151715 [Gene_View]  chr11:129685741-129729898 [Contig_View]  TMEM45B [Vega]
ICGC DataPortalENSG00000151715
TCGA cBioPortalTMEM45B
AceView (NCBI)TMEM45B
Genatlas (Paris)TMEM45B
WikiGenes120224
SOURCE (Princeton)TMEM45B
Genetics Home Reference (NIH)TMEM45B
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM45B  -     chr11:129685741-129729898 +  11q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM45B  -     11q24.3   [Description]    (hg38-Dec_2013)
EnsemblTMEM45B - 11q24.3 [CytoView hg19]  TMEM45B - 11q24.3 [CytoView hg38]
Mapping of homologs : NCBITMEM45B [Mapview hg19]  TMEM45B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098106 AK290283 AK292058 BC016153 GQ129439
RefSeq transcript (Entrez)NM_138788
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)TMEM45B
Cluster EST : UnigeneHs.504301 [ NCBI ]
CGAP (NCI)Hs.504301
Alternative Splicing GalleryENSG00000151715
Gene ExpressionTMEM45B [ NCBI-GEO ]   TMEM45B [ EBI - ARRAY_EXPRESS ]   TMEM45B [ SEEK ]   TMEM45B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM45B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120224
GTEX Portal (Tissue expression)TMEM45B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B21
Splice isoforms : SwissVarQ96B21
PhosPhoSitePlusQ96B21
Domains : Interpro (EBI)DUF716_TMEM45   
Domain families : Pfam (Sanger)DUF716 (PF04819)   
Domain families : Pfam (NCBI)pfam04819   
Conserved Domain (NCBI)TMEM45B
DMDM Disease mutations120224
Blocks (Seattle)TMEM45B
SuperfamilyQ96B21
Human Protein AtlasENSG00000151715
Peptide AtlasQ96B21
HPRD14020
IPIIPI00059683   
Protein Interaction databases
DIP (DOE-UCLA)Q96B21
IntAct (EBI)Q96B21
FunCoupENSG00000151715
BioGRIDTMEM45B
STRING (EMBL)TMEM45B
ZODIACTMEM45B
Ontologies - Pathways
QuickGOQ96B21
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM45B
Atlas of Cancer Signalling NetworkTMEM45B
Wikipedia pathwaysTMEM45B
Orthology - Evolution
OrthoDB120224
GeneTree (enSembl)ENSG00000151715
Phylogenetic Trees/Animal Genes : TreeFamTMEM45B
HOVERGENQ96B21
HOGENOMQ96B21
Homologs : HomoloGeneTMEM45B
Homology/Alignments : Family Browser (UCSC)TMEM45B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM45B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM45B
dbVarTMEM45B
ClinVarTMEM45B
1000_GenomesTMEM45B 
Exome Variant ServerTMEM45B
ExAC (Exome Aggregation Consortium)TMEM45B (select the gene name)
Genetic variants : HAPMAP120224
Genomic Variants (DGV)TMEM45B [DGVbeta]
DECIPHER (Syndromes)11:129685741-129729898  ENSG00000151715
CONAN: Copy Number AnalysisTMEM45B 
Mutations
ICGC Data PortalTMEM45B 
TCGA Data PortalTMEM45B 
Broad Tumor PortalTMEM45B
OASIS PortalTMEM45B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM45B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM45B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM45B
DgiDB (Drug Gene Interaction Database)TMEM45B
DoCM (Curated mutations)TMEM45B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM45B (select a term)
intoGenTMEM45B
Cancer3DTMEM45B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM45B
Genetic Testing Registry TMEM45B
NextProtQ96B21 [Medical]
TSGene120224
GENETestsTMEM45B
Huge Navigator TMEM45B [HugePedia]
snp3D : Map Gene to Disease120224
BioCentury BCIQTMEM45B
ClinGenTMEM45B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120224
Chemical/Pharm GKB GenePA134909603
Clinical trialTMEM45B
Miscellaneous
canSAR (ICR)TMEM45B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM45B
EVEXTMEM45B
GoPubMedTMEM45B
iHOPTMEM45B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:48:58 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.