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TMEM47 (transmembrane protein 47)

Identity

Alias_namesTM4SF10
transmembrane 4 superfamily member 10
Alias_symbol (synonym)BCMP1
DKFZP761J17121
DKFZp564E153
Other alias
HGNC (Hugo) TMEM47
LocusID (NCBI) 83604
Atlas_Id 74949
Location Xp21.1  [Link to chromosome band Xp21]
Location_base_pair Starts at 34645181 and ends at 34675405 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM47   18515
Cards
Entrez_Gene (NCBI)TMEM47  83604  transmembrane protein 47
AliasesBCMP1; TM4SF10
GeneCards (Weizmann)TMEM47
Ensembl hg19 (Hinxton)ENSG00000147027 [Gene_View]  chrX:34645181-34675405 [Contig_View]  TMEM47 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147027 [Gene_View]  chrX:34645181-34675405 [Contig_View]  TMEM47 [Vega]
ICGC DataPortalENSG00000147027
TCGA cBioPortalTMEM47
AceView (NCBI)TMEM47
Genatlas (Paris)TMEM47
WikiGenes83604
SOURCE (Princeton)TMEM47
Genetics Home Reference (NIH)TMEM47
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM47  -     chrX:34645181-34675405 -  Xp21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM47  -     Xp21.1   [Description]    (hg38-Dec_2013)
EnsemblTMEM47 - Xp21.1 [CytoView hg19]  TMEM47 - Xp21.1 [CytoView hg38]
Mapping of homologs : NCBITMEM47 [Mapview hg19]  TMEM47 [Mapview hg38]
OMIM300698   
Gene and transcription
Genbank (Entrez)AK090917 AK311054 AL049257 AL136550 AM392744
RefSeq transcript (Entrez)NM_031442
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)TMEM47
Cluster EST : UnigeneHs.8769 [ NCBI ]
CGAP (NCI)Hs.8769
Alternative Splicing GalleryENSG00000147027
Gene ExpressionTMEM47 [ NCBI-GEO ]   TMEM47 [ EBI - ARRAY_EXPRESS ]   TMEM47 [ SEEK ]   TMEM47 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83604
GTEX Portal (Tissue expression)TMEM47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQJ4
Splice isoforms : SwissVarQ9BQJ4
PhosPhoSitePlusQ9BQJ4
Domains : Interpro (EBI)P53_induced    PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)Claudin_2 (PF13903)   
Domain families : Pfam (NCBI)pfam13903   
Conserved Domain (NCBI)TMEM47
DMDM Disease mutations83604
Blocks (Seattle)TMEM47
SuperfamilyQ9BQJ4
Human Protein AtlasENSG00000147027
Peptide AtlasQ9BQJ4
HPRD06741
IPIIPI00027788   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQJ4
IntAct (EBI)Q9BQJ4
FunCoupENSG00000147027
BioGRIDTMEM47
STRING (EMBL)TMEM47
ZODIACTMEM47
Ontologies - Pathways
QuickGOQ9BQJ4
Ontology : AmiGOmolecular_function  plasma membrane  cell-cell junction  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  plasma membrane  cell-cell junction  biological_process  integral component of membrane  
NDEx NetworkTMEM47
Atlas of Cancer Signalling NetworkTMEM47
Wikipedia pathwaysTMEM47
Orthology - Evolution
OrthoDB83604
GeneTree (enSembl)ENSG00000147027
Phylogenetic Trees/Animal Genes : TreeFamTMEM47
HOVERGENQ9BQJ4
HOGENOMQ9BQJ4
Homologs : HomoloGeneTMEM47
Homology/Alignments : Family Browser (UCSC)TMEM47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM47
dbVarTMEM47
ClinVarTMEM47
1000_GenomesTMEM47 
Exome Variant ServerTMEM47
ExAC (Exome Aggregation Consortium)TMEM47 (select the gene name)
Genetic variants : HAPMAP83604
Genomic Variants (DGV)TMEM47 [DGVbeta]
DECIPHER (Syndromes)X:34645181-34675405  ENSG00000147027
CONAN: Copy Number AnalysisTMEM47 
Mutations
ICGC Data PortalTMEM47 
TCGA Data PortalTMEM47 
Broad Tumor PortalTMEM47
OASIS PortalTMEM47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM47
DgiDB (Drug Gene Interaction Database)TMEM47
DoCM (Curated mutations)TMEM47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM47 (select a term)
intoGenTMEM47
Cancer3DTMEM47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300698   
Orphanet
MedgenTMEM47
Genetic Testing Registry TMEM47
NextProtQ9BQJ4 [Medical]
TSGene83604
GENETestsTMEM47
Huge Navigator TMEM47 [HugePedia]
snp3D : Map Gene to Disease83604
BioCentury BCIQTMEM47
ClinGenTMEM47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83604
Chemical/Pharm GKB GenePA134971248
Clinical trialTMEM47
Miscellaneous
canSAR (ICR)TMEM47 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM47
EVEXTMEM47
GoPubMedTMEM47
iHOPTMEM47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:58 CET 2017

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