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TMEM47 (transmembrane protein 47)

Identity

Alias (NCBI)BCMP1
TM4SF10
VAB-9
HGNC (Hugo) TMEM47
HGNC Alias symbBCMP1
DKFZP761J17121
DKFZp564E153
HGNC Previous nameTM4SF10
HGNC Previous nametransmembrane 4 superfamily member 10
LocusID (NCBI) 83604
Atlas_Id 74949
Location Xp21.1  [Link to chromosome band Xp21]
Location_base_pair Starts at 34627075 and ends at 34657285 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM47   18515
Cards
Entrez_Gene (NCBI)TMEM47    transmembrane protein 47
AliasesBCMP1; TM4SF10; VAB-9
GeneCards (Weizmann)TMEM47
Ensembl hg19 (Hinxton)ENSG00000147027 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147027 [Gene_View]  ENSG00000147027 [Sequence]  chrX:34627075-34657285 [Contig_View]  TMEM47 [Vega]
ICGC DataPortalENSG00000147027
TCGA cBioPortalTMEM47
AceView (NCBI)TMEM47
Genatlas (Paris)TMEM47
SOURCE (Princeton)TMEM47
Genetics Home Reference (NIH)TMEM47
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM47  -     chrX:34627075-34657285 -  Xp21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM47  -     Xp21.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM47 - Xp21.1 [CytoView hg19]  TMEM47 - Xp21.1 [CytoView hg38]
ImmunoBaseENSG00000147027
Genome Data Viewer NCBITMEM47 [Mapview hg19]  
OMIM300698   
Gene and transcription
Genbank (Entrez)AK090917 AK311054 AL049257 AL136550 BC039242
RefSeq transcript (Entrez)NM_031442
Consensus coding sequences : CCDS (NCBI)TMEM47
Gene ExpressionTMEM47 [ NCBI-GEO ]   TMEM47 [ EBI - ARRAY_EXPRESS ]   TMEM47 [ SEEK ]   TMEM47 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM47 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM47 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83604
GTEX Portal (Tissue expression)TMEM47
Human Protein AtlasENSG00000147027-TMEM47 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQJ4
PhosPhoSitePlusQ9BQJ4
Domains : Interpro (EBI)P53_induced   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM47
SuperfamilyQ9BQJ4
AlphaFold pdb e-kbQ9BQJ4   
Human Protein Atlas [tissue]ENSG00000147027-TMEM47 [tissue]
HPRD06741
Protein Interaction databases
DIP (DOE-UCLA)Q9BQJ4
IntAct (EBI)Q9BQJ4
BioGRIDTMEM47
STRING (EMBL)TMEM47
ZODIACTMEM47
Ontologies - Pathways
QuickGOQ9BQJ4
Ontology : AmiGOmolecular_function  protein binding  plasma membrane  cell-cell junction  adherens junction  biological_process  integral component of membrane  cell-cell adhesion  
Ontology : EGO-EBImolecular_function  protein binding  plasma membrane  cell-cell junction  adherens junction  biological_process  integral component of membrane  cell-cell adhesion  
NDEx NetworkTMEM47
Atlas of Cancer Signalling NetworkTMEM47
Wikipedia pathwaysTMEM47
Orthology - Evolution
OrthoDB83604
GeneTree (enSembl)ENSG00000147027
Phylogenetic Trees/Animal Genes : TreeFamTMEM47
Homologs : HomoloGeneTMEM47
Homology/Alignments : Family Browser (UCSC)TMEM47
Gene fusions - Rearrangements
Fusion : QuiverTMEM47
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM47
dbVarTMEM47
ClinVarTMEM47
MonarchTMEM47
1000_GenomesTMEM47 
Exome Variant ServerTMEM47
GNOMAD BrowserENSG00000147027
Varsome BrowserTMEM47
ACMGTMEM47 variants
VarityQ9BQJ4
Genomic Variants (DGV)TMEM47 [DGVbeta]
DECIPHERTMEM47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM47 
Mutations
ICGC Data PortalTMEM47 
TCGA Data PortalTMEM47 
Broad Tumor PortalTMEM47
OASIS PortalTMEM47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM47  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM47
Mutations and Diseases : HGMDTMEM47
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM47
DgiDB (Drug Gene Interaction Database)TMEM47
DoCM (Curated mutations)TMEM47
CIViC (Clinical Interpretations of Variants in Cancer)TMEM47
Cancer3DTMEM47
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300698   
Orphanet
DisGeNETTMEM47
MedgenTMEM47
Genetic Testing Registry TMEM47
NextProtQ9BQJ4 [Medical]
GENETestsTMEM47
Target ValidationTMEM47
Huge Navigator TMEM47 [HugePedia]
ClinGenTMEM47
Clinical trials, drugs, therapy
MyCancerGenomeTMEM47
Protein Interactions : CTDTMEM47
Pharm GKB GenePA134971248
PharosQ9BQJ4
Clinical trialTMEM47
Miscellaneous
canSAR (ICR)TMEM47
HarmonizomeTMEM47
DataMed IndexTMEM47
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:16 CEST 2021

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