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TMEM5 (transmembrane protein 5)

Identity

Alias_symbol (synonym)HP10481
Other aliasMDDGA10
HGNC (Hugo) TMEM5
LocusID (NCBI) 10329
Atlas_Id 74950
Location 12q14.2  [Link to chromosome band 12q14]
Location_base_pair Starts at 63780126 and ends at 63809558 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HMGN3 (6q14.1) / TMEM5 (12q14.2)RPRD2 (1q21.3) / TMEM5 (12q14.2)SRGAP1 (12q14.2) / TMEM5 (12q14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM5   13530
Cards
Entrez_Gene (NCBI)TMEM5  10329  transmembrane protein 5
AliasesHP10481; MDDGA10
GeneCards (Weizmann)TMEM5
Ensembl hg19 (Hinxton)ENSG00000118600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118600 [Gene_View]  chr12:63780126-63809558 [Contig_View]  TMEM5 [Vega]
ICGC DataPortalENSG00000118600
TCGA cBioPortalTMEM5
AceView (NCBI)TMEM5
Genatlas (Paris)TMEM5
WikiGenes10329
SOURCE (Princeton)TMEM5
Genetics Home Reference (NIH)TMEM5
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM5  -     chr12:63780126-63809558 +  12q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM5  -     12q14.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM5 - 12q14.2 [CytoView hg19]  TMEM5 - 12q14.2 [CytoView hg38]
Mapping of homologs : NCBITMEM5 [Mapview hg19]  TMEM5 [Mapview hg38]
OMIM605862   615041   
Gene and transcription
Genbank (Entrez)AB015633 AI458269 AK124211 AK289382 BC002596
RefSeq transcript (Entrez)NM_001278237 NM_014254
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM5
Cluster EST : UnigeneHs.716859 [ NCBI ]
CGAP (NCI)Hs.716859
Alternative Splicing GalleryENSG00000118600
Gene ExpressionTMEM5 [ NCBI-GEO ]   TMEM5 [ EBI - ARRAY_EXPRESS ]   TMEM5 [ SEEK ]   TMEM5 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10329
GTEX Portal (Tissue expression)TMEM5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2B1
Splice isoforms : SwissVarQ9Y2B1
PhosPhoSitePlusQ9Y2B1
Domains : Interpro (EBI)Exostosin   
Domain families : Pfam (Sanger)Exostosin (PF03016)   
Domain families : Pfam (NCBI)pfam03016   
Conserved Domain (NCBI)TMEM5
DMDM Disease mutations10329
Blocks (Seattle)TMEM5
SuperfamilyQ9Y2B1
Human Protein AtlasENSG00000118600
Peptide AtlasQ9Y2B1
HPRD12057
IPIIPI00003392   IPI01011551   IPI01009233   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2B1
IntAct (EBI)Q9Y2B1
FunCoupENSG00000118600
BioGRIDTMEM5
STRING (EMBL)TMEM5
ZODIACTMEM5
Ontologies - Pathways
QuickGOQ9Y2B1
Ontology : AmiGOGolgi membrane  nucleoplasm  Golgi apparatus  integral component of plasma membrane  protein O-linked mannosylation  
Ontology : EGO-EBIGolgi membrane  nucleoplasm  Golgi apparatus  integral component of plasma membrane  protein O-linked mannosylation  
NDEx NetworkTMEM5
Atlas of Cancer Signalling NetworkTMEM5
Wikipedia pathwaysTMEM5
Orthology - Evolution
OrthoDB10329
GeneTree (enSembl)ENSG00000118600
Phylogenetic Trees/Animal Genes : TreeFamTMEM5
HOVERGENQ9Y2B1
HOGENOMQ9Y2B1
Homologs : HomoloGeneTMEM5
Homology/Alignments : Family Browser (UCSC)TMEM5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM5
dbVarTMEM5
ClinVarTMEM5
1000_GenomesTMEM5 
Exome Variant ServerTMEM5
ExAC (Exome Aggregation Consortium)TMEM5 (select the gene name)
Genetic variants : HAPMAP10329
Genomic Variants (DGV)TMEM5 [DGVbeta]
DECIPHERTMEM5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM5 
Mutations
ICGC Data PortalTMEM5 
TCGA Data PortalTMEM5 
Broad Tumor PortalTMEM5
OASIS PortalTMEM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM5
DgiDB (Drug Gene Interaction Database)TMEM5
DoCM (Curated mutations)TMEM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM5 (select a term)
intoGenTMEM5
Cancer3DTMEM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605862    615041   
Orphanet8725   
MedgenTMEM5
Genetic Testing Registry TMEM5
NextProtQ9Y2B1 [Medical]
TSGene10329
GENETestsTMEM5
Target ValidationTMEM5
Huge Navigator TMEM5 [HugePedia]
snp3D : Map Gene to Disease10329
BioCentury BCIQTMEM5
ClinGenTMEM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10329
Chemical/Pharm GKB GenePA37796
Clinical trialTMEM5
Miscellaneous
canSAR (ICR)TMEM5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM5
EVEXTMEM5
GoPubMedTMEM5
iHOPTMEM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:02 CEST 2017

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