Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM51 (transmembrane protein 51)

Identity

Alias_namesC1orf72
chromosome 1 open reading frame 72
Alias_symbol (synonym)FLJ10199
Other alias
HGNC (Hugo) TMEM51
LocusID (NCBI) 55092
Atlas_Id 40580
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 15152532 and ends at 15220478 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PLEKHM2 (1p36.21) / TMEM51 (1p36.21)SPEN (1p36.21) / TMEM51 (1p36.21)TMEM51 (1p36.21) / KAZN (1p36.21)
TMEM51 (1p36.21) / TMEM51 (1p36.21)PLEKHM2 1p36.21 / TMEM51 1p36.21SPEN 1p36.21 / TMEM51 1p36.21
TMEM51 1p36.21 / KAZN 1p36.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM51   25488
Cards
Entrez_Gene (NCBI)TMEM51  55092  transmembrane protein 51
AliasesC1orf72
GeneCards (Weizmann)TMEM51
Ensembl hg19 (Hinxton)ENSG00000171729 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171729 [Gene_View]  chr1:15152532-15220478 [Contig_View]  TMEM51 [Vega]
ICGC DataPortalENSG00000171729
TCGA cBioPortalTMEM51
AceView (NCBI)TMEM51
Genatlas (Paris)TMEM51
WikiGenes55092
SOURCE (Princeton)TMEM51
Genetics Home Reference (NIH)TMEM51
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM51  -     chr1:15152532-15220478 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM51  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblTMEM51 - 1p36.21 [CytoView hg19]  TMEM51 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBITMEM51 [Mapview hg19]  TMEM51 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI216532 AK001061 AK098467 AK129922 AK292184
RefSeq transcript (Entrez)NM_001136216 NM_001136217 NM_001136218 NM_001319665 NM_018022
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM51
Cluster EST : UnigeneHs.465305 [ NCBI ]
CGAP (NCI)Hs.465305
Alternative Splicing GalleryENSG00000171729
Gene ExpressionTMEM51 [ NCBI-GEO ]   TMEM51 [ EBI - ARRAY_EXPRESS ]   TMEM51 [ SEEK ]   TMEM51 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM51 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55092
GTEX Portal (Tissue expression)TMEM51
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NW97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NW97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NW97
Splice isoforms : SwissVarQ9NW97
PhosPhoSitePlusQ9NW97
Domains : Interpro (EBI)TMEM51   
Domain families : Pfam (Sanger)TMEM51 (PF15345)   
Domain families : Pfam (NCBI)pfam15345   
Conserved Domain (NCBI)TMEM51
DMDM Disease mutations55092
Blocks (Seattle)TMEM51
SuperfamilyQ9NW97
Human Protein AtlasENSG00000171729
Peptide AtlasQ9NW97
HPRD07651
IPIIPI00183082   IPI00386664   IPI00646938   
Protein Interaction databases
DIP (DOE-UCLA)Q9NW97
IntAct (EBI)Q9NW97
FunCoupENSG00000171729
BioGRIDTMEM51
STRING (EMBL)TMEM51
ZODIACTMEM51
Ontologies - Pathways
QuickGOQ9NW97
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  integral component of membrane  
NDEx NetworkTMEM51
Atlas of Cancer Signalling NetworkTMEM51
Wikipedia pathwaysTMEM51
Orthology - Evolution
OrthoDB55092
GeneTree (enSembl)ENSG00000171729
Phylogenetic Trees/Animal Genes : TreeFamTMEM51
HOVERGENQ9NW97
HOGENOMQ9NW97
Homologs : HomoloGeneTMEM51
Homology/Alignments : Family Browser (UCSC)TMEM51
Gene fusions - Rearrangements
Fusion : MitelmanPLEKHM2/TMEM51 [1p36.21/1p36.21]  [t(1;1)(p36;p36)]  
Fusion : MitelmanSPEN/TMEM51 [1p36.21/1p36.21]  [t(1;1)(p36;p36)]  
Fusion : MitelmanTMEM51/KAZN [1p36.21/1p36.21]  [t(1;1)(p36;p36)]  
Fusion: TCGAPLEKHM2 1p36.21 TMEM51 1p36.21 GBM
Fusion: TCGASPEN 1p36.21 TMEM51 1p36.21 OV
Fusion: TCGATMEM51 1p36.21 KAZN 1p36.21 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM51
dbVarTMEM51
ClinVarTMEM51
1000_GenomesTMEM51 
Exome Variant ServerTMEM51
ExAC (Exome Aggregation Consortium)TMEM51 (select the gene name)
Genetic variants : HAPMAP55092
Genomic Variants (DGV)TMEM51 [DGVbeta]
DECIPHERTMEM51 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM51 
Mutations
ICGC Data PortalTMEM51 
TCGA Data PortalTMEM51 
Broad Tumor PortalTMEM51
OASIS PortalTMEM51 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM51  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM51
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM51
DgiDB (Drug Gene Interaction Database)TMEM51
DoCM (Curated mutations)TMEM51 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM51 (select a term)
intoGenTMEM51
Cancer3DTMEM51(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM51
Genetic Testing Registry TMEM51
NextProtQ9NW97 [Medical]
TSGene55092
GENETestsTMEM51
Target ValidationTMEM51
Huge Navigator TMEM51 [HugePedia]
snp3D : Map Gene to Disease55092
BioCentury BCIQTMEM51
ClinGenTMEM51
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55092
Chemical/Pharm GKB GenePA142670767
Clinical trialTMEM51
Miscellaneous
canSAR (ICR)TMEM51 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM51
EVEXTMEM51
GoPubMedTMEM51
iHOPTMEM51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 14:09:59 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.