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TMEM52 (transmembrane protein 52)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM52
LocusID (NCBI) 339456
Atlas_Id 74954
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1917591 and ends at 1919279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM52   27916
Cards
Entrez_Gene (NCBI)TMEM52    transmembrane protein 52
Aliases
GeneCards (Weizmann)TMEM52
Ensembl hg19 (Hinxton)ENSG00000178821 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178821 [Gene_View]  ENSG00000178821 [Sequence]  chr1:1917591-1919279 [Contig_View]  TMEM52 [Vega]
ICGC DataPortalENSG00000178821
TCGA cBioPortalTMEM52
AceView (NCBI)TMEM52
Genatlas (Paris)TMEM52
SOURCE (Princeton)TMEM52
Genetics Home Reference (NIH)TMEM52
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM52  -     chr1:1917591-1919279 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM52  -     1p36.33   [Description]    (hg19-Feb_2009)
GoldenPathTMEM52 - 1p36.33 [CytoView hg19]  TMEM52 - 1p36.33 [CytoView hg38]
ImmunoBaseENSG00000178821
Genome Data Viewer NCBITMEM52 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ278736 AW083128 AY358544 CN263898
RefSeq transcript (Entrez)NM_178545
Consensus coding sequences : CCDS (NCBI)TMEM52
Gene ExpressionTMEM52 [ NCBI-GEO ]   TMEM52 [ EBI - ARRAY_EXPRESS ]   TMEM52 [ SEEK ]   TMEM52 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM52 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM52 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339456
GTEX Portal (Tissue expression)TMEM52
Human Protein AtlasENSG00000178821-TMEM52 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDY8
PhosPhoSitePlusQ8NDY8
Domains : Interpro (EBI)TMEM52   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM52
SuperfamilyQ8NDY8
AlphaFold pdb e-kbQ8NDY8   
Human Protein Atlas [tissue]ENSG00000178821-TMEM52 [tissue]
HPRD14166
Protein Interaction databases
DIP (DOE-UCLA)Q8NDY8
IntAct (EBI)Q8NDY8
BioGRIDTMEM52
STRING (EMBL)TMEM52
ZODIACTMEM52
Ontologies - Pathways
QuickGOQ8NDY8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM52
Atlas of Cancer Signalling NetworkTMEM52
Wikipedia pathwaysTMEM52
Orthology - Evolution
OrthoDB339456
GeneTree (enSembl)ENSG00000178821
Phylogenetic Trees/Animal Genes : TreeFamTMEM52
Homologs : HomoloGeneTMEM52
Homology/Alignments : Family Browser (UCSC)TMEM52
Gene fusions - Rearrangements
Fusion : QuiverTMEM52
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM52
dbVarTMEM52
ClinVarTMEM52
MonarchTMEM52
1000_GenomesTMEM52 
Exome Variant ServerTMEM52
GNOMAD BrowserENSG00000178821
Varsome BrowserTMEM52
ACMGTMEM52 variants
VarityQ8NDY8
Genomic Variants (DGV)TMEM52 [DGVbeta]
DECIPHERTMEM52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM52 
Mutations
ICGC Data PortalTMEM52 
TCGA Data PortalTMEM52 
Broad Tumor PortalTMEM52
OASIS PortalTMEM52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM52  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM52
Mutations and Diseases : HGMDTMEM52
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM52
DgiDB (Drug Gene Interaction Database)TMEM52
DoCM (Curated mutations)TMEM52
CIViC (Clinical Interpretations of Variants in Cancer)TMEM52
Cancer3DTMEM52
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM52
MedgenTMEM52
Genetic Testing Registry TMEM52
NextProtQ8NDY8 [Medical]
GENETestsTMEM52
Target ValidationTMEM52
Huge Navigator TMEM52 [HugePedia]
ClinGenTMEM52
Clinical trials, drugs, therapy
MyCancerGenomeTMEM52
Protein Interactions : CTDTMEM52
Pharm GKB GenePA142670768
PharosQ8NDY8
Clinical trialTMEM52
Miscellaneous
canSAR (ICR)TMEM52
HarmonizomeTMEM52
DataMed IndexTMEM52
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:26:17 CEST 2021

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