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TMEM52 (transmembrane protein 52)

Identity

Other alias-
HGNC (Hugo) TMEM52
LocusID (NCBI) 339456
Atlas_Id 74954
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1849029 and ends at 1850740 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM52   27916
Cards
Entrez_Gene (NCBI)TMEM52  339456  transmembrane protein 52
Aliases
GeneCards (Weizmann)TMEM52
Ensembl hg19 (Hinxton)ENSG00000178821 [Gene_View]  chr1:1849029-1850740 [Contig_View]  TMEM52 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178821 [Gene_View]  chr1:1849029-1850740 [Contig_View]  TMEM52 [Vega]
ICGC DataPortalENSG00000178821
TCGA cBioPortalTMEM52
AceView (NCBI)TMEM52
Genatlas (Paris)TMEM52
WikiGenes339456
SOURCE (Princeton)TMEM52
Genetics Home Reference (NIH)TMEM52
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM52  -     chr1:1849029-1850740 -  1p36.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM52  -     1p36.33   [Description]    (hg38-Dec_2013)
EnsemblTMEM52 - 1p36.33 [CytoView hg19]  TMEM52 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBITMEM52 [Mapview hg19]  TMEM52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ278736 AW083128 AY358544 CN263898 GQ129259
RefSeq transcript (Entrez)NM_178545
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929288
Consensus coding sequences : CCDS (NCBI)TMEM52
Cluster EST : UnigeneHs.123423 [ NCBI ]
CGAP (NCI)Hs.123423
Alternative Splicing GalleryENSG00000178821
Gene ExpressionTMEM52 [ NCBI-GEO ]   TMEM52 [ EBI - ARRAY_EXPRESS ]   TMEM52 [ SEEK ]   TMEM52 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339456
GTEX Portal (Tissue expression)TMEM52
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDY8
Splice isoforms : SwissVarQ8NDY8
PhosPhoSitePlusQ8NDY8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM52
DMDM Disease mutations339456
Blocks (Seattle)TMEM52
SuperfamilyQ8NDY8
Human Protein AtlasENSG00000178821
Peptide AtlasQ8NDY8
HPRD14166
IPIIPI00168625   IPI00432369   IPI00607840   IPI00607551   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDY8
IntAct (EBI)Q8NDY8
FunCoupENSG00000178821
BioGRIDTMEM52
STRING (EMBL)TMEM52
ZODIACTMEM52
Ontologies - Pathways
QuickGOQ8NDY8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM52
Atlas of Cancer Signalling NetworkTMEM52
Wikipedia pathwaysTMEM52
Orthology - Evolution
OrthoDB339456
GeneTree (enSembl)ENSG00000178821
Phylogenetic Trees/Animal Genes : TreeFamTMEM52
HOVERGENQ8NDY8
HOGENOMQ8NDY8
Homologs : HomoloGeneTMEM52
Homology/Alignments : Family Browser (UCSC)TMEM52
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM52
dbVarTMEM52
ClinVarTMEM52
1000_GenomesTMEM52 
Exome Variant ServerTMEM52
ExAC (Exome Aggregation Consortium)TMEM52 (select the gene name)
Genetic variants : HAPMAP339456
Genomic Variants (DGV)TMEM52 [DGVbeta]
DECIPHER (Syndromes)1:1849029-1850740  ENSG00000178821
CONAN: Copy Number AnalysisTMEM52 
Mutations
ICGC Data PortalTMEM52 
TCGA Data PortalTMEM52 
Broad Tumor PortalTMEM52
OASIS PortalTMEM52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM52
DgiDB (Drug Gene Interaction Database)TMEM52
DoCM (Curated mutations)TMEM52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM52 (select a term)
intoGenTMEM52
Cancer3DTMEM52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM52
Genetic Testing Registry TMEM52
NextProtQ8NDY8 [Medical]
TSGene339456
GENETestsTMEM52
Huge Navigator TMEM52 [HugePedia]
snp3D : Map Gene to Disease339456
BioCentury BCIQTMEM52
ClinGenTMEM52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339456
Chemical/Pharm GKB GenePA142670768
Clinical trialTMEM52
Miscellaneous
canSAR (ICR)TMEM52 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM52
EVEXTMEM52
GoPubMedTMEM52
iHOPTMEM52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:59 CET 2017

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