Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM54 (transmembrane protein 54)

Identity

Alias (NCBI)BCLP
CAC-1
CAC1
HGNC (Hugo) TMEM54
HGNC Alias symbCAC-1
LocusID (NCBI) 113452
Atlas_Id 74956
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 32894595 and ends at 32901389 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GRN (17q21.31) / TMEM54 (1p35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM54   24143
Cards
Entrez_Gene (NCBI)TMEM54    transmembrane protein 54
AliasesBCLP; CAC-1; CAC1
GeneCards (Weizmann)TMEM54
Ensembl hg19 (Hinxton)ENSG00000121900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121900 [Gene_View]  ENSG00000121900 [Sequence]  chr1:32894595-32901389 [Contig_View]  TMEM54 [Vega]
ICGC DataPortalENSG00000121900
TCGA cBioPortalTMEM54
AceView (NCBI)TMEM54
Genatlas (Paris)TMEM54
SOURCE (Princeton)TMEM54
Genetics Home Reference (NIH)TMEM54
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM54  -     chr1:32894595-32901389 -  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM54  -     1p35.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM54 - 1p35.1 [CytoView hg19]  TMEM54 - 1p35.1 [CytoView hg38]
ImmunoBaseENSG00000121900
Genome Data Viewer NCBITMEM54 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB012692 AY027543 AY359883 BC001418 BC013953
RefSeq transcript (Entrez)NM_001329722 NM_001329723 NM_001329724 NM_001329725 NM_033504
Consensus coding sequences : CCDS (NCBI)TMEM54
Gene ExpressionTMEM54 [ NCBI-GEO ]   TMEM54 [ EBI - ARRAY_EXPRESS ]   TMEM54 [ SEEK ]   TMEM54 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM54 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM54 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113452
GTEX Portal (Tissue expression)TMEM54
Human Protein AtlasENSG00000121900-TMEM54 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969K7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969K7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969K7
PhosPhoSitePlusQ969K7
Domains : Interpro (EBI)Beta-casein-like   
Domain families : Pfam (Sanger)BCLP (PF12304)   
Domain families : Pfam (NCBI)pfam12304   
Conserved Domain (NCBI)TMEM54
SuperfamilyQ969K7
AlphaFold pdb e-kbQ969K7   
Human Protein Atlas [tissue]ENSG00000121900-TMEM54 [tissue]
HPRD12524
Protein Interaction databases
DIP (DOE-UCLA)Q969K7
IntAct (EBI)Q969K7
BioGRIDTMEM54
STRING (EMBL)TMEM54
ZODIACTMEM54
Ontologies - Pathways
QuickGOQ969K7
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  integral component of membrane  
NDEx NetworkTMEM54
Atlas of Cancer Signalling NetworkTMEM54
Wikipedia pathwaysTMEM54
Orthology - Evolution
OrthoDB113452
GeneTree (enSembl)ENSG00000121900
Phylogenetic Trees/Animal Genes : TreeFamTMEM54
Homologs : HomoloGeneTMEM54
Homology/Alignments : Family Browser (UCSC)TMEM54
Gene fusions - Rearrangements
Fusion : QuiverTMEM54
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM54
dbVarTMEM54
ClinVarTMEM54
MonarchTMEM54
1000_GenomesTMEM54 
Exome Variant ServerTMEM54
GNOMAD BrowserENSG00000121900
Varsome BrowserTMEM54
ACMGTMEM54 variants
VarityQ969K7
Genomic Variants (DGV)TMEM54 [DGVbeta]
DECIPHERTMEM54 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM54 
Mutations
ICGC Data PortalTMEM54 
TCGA Data PortalTMEM54 
Broad Tumor PortalTMEM54
OASIS PortalTMEM54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM54  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM54
Mutations and Diseases : HGMDTMEM54
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM54
DgiDB (Drug Gene Interaction Database)TMEM54
DoCM (Curated mutations)TMEM54
CIViC (Clinical Interpretations of Variants in Cancer)TMEM54
Cancer3DTMEM54
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM54
MedgenTMEM54
Genetic Testing Registry TMEM54
NextProtQ969K7 [Medical]
GENETestsTMEM54
Target ValidationTMEM54
Huge Navigator TMEM54 [HugePedia]
ClinGenTMEM54
Clinical trials, drugs, therapy
MyCancerGenomeTMEM54
Protein Interactions : CTDTMEM54
Pharm GKB GenePA142670770
PharosQ969K7
Clinical trialTMEM54
Miscellaneous
canSAR (ICR)TMEM54
HarmonizomeTMEM54
DataMed IndexTMEM54
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:26:17 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.