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TMEM55A (transmembrane protein 55A)

Identity

Alias_names5-bisphosphate 4-phosphatase
Alias_symbol (synonym)DKFZp762O076
Other alias-
HGNC (Hugo) TMEM55A
LocusID (NCBI) 55529
Atlas_Id 54713
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 90994271 and ends at 91040975 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EIF3B (7p22.3) / TMEM55A (8q21.3)SHFM1 (7q21.3) / TMEM55A (8q21.3)TMEM55A (8q21.3) / ADAM28 (8p21.2)
TMEM55A (8q21.3) / LCLAT1 (2p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM55A   25452
Cards
Entrez_Gene (NCBI)TMEM55A  55529  transmembrane protein 55A
Aliases
GeneCards (Weizmann)TMEM55A
Ensembl hg19 (Hinxton)ENSG00000155099 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155099 [Gene_View]  chr8:90994271-91040975 [Contig_View]  TMEM55A [Vega]
ICGC DataPortalENSG00000155099
TCGA cBioPortalTMEM55A
AceView (NCBI)TMEM55A
Genatlas (Paris)TMEM55A
WikiGenes55529
SOURCE (Princeton)TMEM55A
Genetics Home Reference (NIH)TMEM55A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM55A  -     chr8:90994271-91040975 -  8q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM55A  -     8q21.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM55A - 8q21.3 [CytoView hg19]  TMEM55A - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBITMEM55A [Mapview hg19]  TMEM55A [Mapview hg38]
OMIM609864   
Gene and transcription
Genbank (Entrez)AK313783 AX775961 BC033892 CR749733 DA171968
RefSeq transcript (Entrez)NM_018710
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM55A
Cluster EST : UnigeneHs.202517 [ NCBI ]
CGAP (NCI)Hs.202517
Alternative Splicing GalleryENSG00000155099
Gene ExpressionTMEM55A [ NCBI-GEO ]   TMEM55A [ EBI - ARRAY_EXPRESS ]   TMEM55A [ SEEK ]   TMEM55A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM55A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55529
GTEX Portal (Tissue expression)TMEM55A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4L2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4L2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4L2
Splice isoforms : SwissVarQ8N4L2
Catalytic activity : Enzyme3.1.3.78 [ Enzyme-Expasy ]   3.1.3.783.1.3.78 [ IntEnz-EBI ]   3.1.3.78 [ BRENDA ]   3.1.3.78 [ KEGG ]   
PhosPhoSitePlusQ8N4L2
Domains : Interpro (EBI)PtdIns-P2-Ptase   
Domain families : Pfam (Sanger)Tmemb_55A (PF09788)   
Domain families : Pfam (NCBI)pfam09788   
Conserved Domain (NCBI)TMEM55A
DMDM Disease mutations55529
Blocks (Seattle)TMEM55A
SuperfamilyQ8N4L2
Human Protein AtlasENSG00000155099
Peptide AtlasQ8N4L2
HPRD13233
IPIIPI00175029   IPI00791405   IPI00979465   IPI00980806   IPI00789289   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4L2
IntAct (EBI)Q8N4L2
FunCoupENSG00000155099
BioGRIDTMEM55A
STRING (EMBL)TMEM55A
ZODIACTMEM55A
Ontologies - Pathways
QuickGOQ8N4L2
Ontology : AmiGOlysosome  lysosomal membrane  integral component of membrane  late endosome membrane  phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity  phosphatidylinositol dephosphorylation  
Ontology : EGO-EBIlysosome  lysosomal membrane  integral component of membrane  late endosome membrane  phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity  phosphatidylinositol dephosphorylation  
NDEx NetworkTMEM55A
Atlas of Cancer Signalling NetworkTMEM55A
Wikipedia pathwaysTMEM55A
Orthology - Evolution
OrthoDB55529
GeneTree (enSembl)ENSG00000155099
Phylogenetic Trees/Animal Genes : TreeFamTMEM55A
HOVERGENQ8N4L2
HOGENOMQ8N4L2
Homologs : HomoloGeneTMEM55A
Homology/Alignments : Family Browser (UCSC)TMEM55A
Gene fusions - Rearrangements
Fusion : MitelmanTMEM55A/LCLAT1 [8q21.3/2p23.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM55A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM55A
dbVarTMEM55A
ClinVarTMEM55A
1000_GenomesTMEM55A 
Exome Variant ServerTMEM55A
ExAC (Exome Aggregation Consortium)TMEM55A (select the gene name)
Genetic variants : HAPMAP55529
Genomic Variants (DGV)TMEM55A [DGVbeta]
DECIPHERTMEM55A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM55A 
Mutations
ICGC Data PortalTMEM55A 
TCGA Data PortalTMEM55A 
Broad Tumor PortalTMEM55A
OASIS PortalTMEM55A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM55A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM55A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM55A
DgiDB (Drug Gene Interaction Database)TMEM55A
DoCM (Curated mutations)TMEM55A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM55A (select a term)
intoGenTMEM55A
Cancer3DTMEM55A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609864   
Orphanet
MedgenTMEM55A
Genetic Testing Registry TMEM55A
NextProtQ8N4L2 [Medical]
TSGene55529
GENETestsTMEM55A
Target ValidationTMEM55A
Huge Navigator TMEM55A [HugePedia]
snp3D : Map Gene to Disease55529
BioCentury BCIQTMEM55A
ClinGenTMEM55A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55529
Chemical/Pharm GKB GenePA142670771
Clinical trialTMEM55A
Miscellaneous
canSAR (ICR)TMEM55A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM55A
EVEXTMEM55A
GoPubMedTMEM55A
iHOPTMEM55A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:35:28 CEST 2017

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