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TMEM55B (transmembrane protein 55B)

Identity

Alias_namesC14orf9
chromosome 14 open reading frame 9
Alias_symbol (synonym)MGC26684
Other alias
HGNC (Hugo) TMEM55B
LocusID (NCBI) 90809
Atlas_Id 74957
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 20926012 and ends at 20929771 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM55B   19299
Cards
Entrez_Gene (NCBI)TMEM55B  90809  transmembrane protein 55B
AliasesC14orf9
GeneCards (Weizmann)TMEM55B
Ensembl hg19 (Hinxton)ENSG00000165782 [Gene_View]  chr14:20926012-20929771 [Contig_View]  TMEM55B [Vega]
Ensembl hg38 (Hinxton)ENSG00000165782 [Gene_View]  chr14:20926012-20929771 [Contig_View]  TMEM55B [Vega]
ICGC DataPortalENSG00000165782
TCGA cBioPortalTMEM55B
AceView (NCBI)TMEM55B
Genatlas (Paris)TMEM55B
WikiGenes90809
SOURCE (Princeton)TMEM55B
Genetics Home Reference (NIH)TMEM55B
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM55B  -     chr14:20926012-20929771 -  14q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM55B  -     14q11.2   [Description]    (hg38-Dec_2013)
EnsemblTMEM55B - 14q11.2 [CytoView hg19]  TMEM55B - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBITMEM55B [Mapview hg19]  TMEM55B [Mapview hg38]
OMIM609865   
Gene and transcription
Genbank (Entrez)AK314021 AL137727 AM392745 BC002867 BC020947
RefSeq transcript (Entrez)NM_001100814 NM_144568
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)TMEM55B
Cluster EST : UnigeneHs.7001 [ NCBI ]
CGAP (NCI)Hs.7001
Alternative Splicing GalleryENSG00000165782
Gene ExpressionTMEM55B [ NCBI-GEO ]   TMEM55B [ EBI - ARRAY_EXPRESS ]   TMEM55B [ SEEK ]   TMEM55B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM55B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90809
GTEX Portal (Tissue expression)TMEM55B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86T03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86T03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86T03
Splice isoforms : SwissVarQ86T03
Catalytic activity : Enzyme3.1.3.78 [ Enzyme-Expasy ]   3.1.3.783.1.3.78 [ IntEnz-EBI ]   3.1.3.78 [ BRENDA ]   3.1.3.78 [ KEGG ]   
PhosPhoSitePlusQ86T03
Domains : Interpro (EBI)Transmembrane_protein_55A/B   
Domain families : Pfam (Sanger)Tmemb_55A (PF09788)   
Domain families : Pfam (NCBI)pfam09788   
Conserved Domain (NCBI)TMEM55B
DMDM Disease mutations90809
Blocks (Seattle)TMEM55B
SuperfamilyQ86T03
Human Protein AtlasENSG00000165782
Peptide AtlasQ86T03
HPRD12660
IPIIPI00030530   IPI00332278   IPI00332279   IPI01025634   IPI01025273   IPI01025378   
Protein Interaction databases
DIP (DOE-UCLA)Q86T03
IntAct (EBI)Q86T03
FunCoupENSG00000165782
BioGRIDTMEM55B
STRING (EMBL)TMEM55B
ZODIACTMEM55B
Ontologies - Pathways
QuickGOQ86T03
Ontology : AmiGOlysosomal membrane  metabolic process  integral component of membrane  hydrolase activity  late endosome membrane  
Ontology : EGO-EBIlysosomal membrane  metabolic process  integral component of membrane  hydrolase activity  late endosome membrane  
NDEx NetworkTMEM55B
Atlas of Cancer Signalling NetworkTMEM55B
Wikipedia pathwaysTMEM55B
Orthology - Evolution
OrthoDB90809
GeneTree (enSembl)ENSG00000165782
Phylogenetic Trees/Animal Genes : TreeFamTMEM55B
HOVERGENQ86T03
HOGENOMQ86T03
Homologs : HomoloGeneTMEM55B
Homology/Alignments : Family Browser (UCSC)TMEM55B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM55B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM55B
dbVarTMEM55B
ClinVarTMEM55B
1000_GenomesTMEM55B 
Exome Variant ServerTMEM55B
ExAC (Exome Aggregation Consortium)TMEM55B (select the gene name)
Genetic variants : HAPMAP90809
Genomic Variants (DGV)TMEM55B [DGVbeta]
DECIPHER (Syndromes)14:20926012-20929771  ENSG00000165782
CONAN: Copy Number AnalysisTMEM55B 
Mutations
ICGC Data PortalTMEM55B 
TCGA Data PortalTMEM55B 
Broad Tumor PortalTMEM55B
OASIS PortalTMEM55B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM55B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM55B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM55B
DgiDB (Drug Gene Interaction Database)TMEM55B
DoCM (Curated mutations)TMEM55B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM55B (select a term)
intoGenTMEM55B
Cancer3DTMEM55B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609865   
Orphanet
MedgenTMEM55B
Genetic Testing Registry TMEM55B
NextProtQ86T03 [Medical]
TSGene90809
GENETestsTMEM55B
Huge Navigator TMEM55B [HugePedia]
snp3D : Map Gene to Disease90809
BioCentury BCIQTMEM55B
ClinGenTMEM55B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90809
Chemical/Pharm GKB GenePA134919069
Clinical trialTMEM55B
Miscellaneous
canSAR (ICR)TMEM55B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM55B
EVEXTMEM55B
GoPubMedTMEM55B
iHOPTMEM55B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:00 CET 2017

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