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TMEM56 (transmembrane protein 56)

Identity

Alias_symbol (synonym)FLJ31842
Other alias-
HGNC (Hugo) TMEM56
LocusID (NCBI) 148534
Atlas_Id 74958
Location 1p21.3  [Link to chromosome band 1p21]
Location_base_pair Starts at 95092517 and ends at 95197605 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RWDD3 (1p21.3) / TMEM56 (1p21.3)TMEM56 (1p21.3) / DDOST (1p36.12)TMEM56 (1p21.3) / FNBP1L (1p22.1)
ZCCHC10 (5q31.1) / TMEM56 (1p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM56   26477
Cards
Entrez_Gene (NCBI)TMEM56  148534  transmembrane protein 56
Aliases
GeneCards (Weizmann)TMEM56
Ensembl hg19 (Hinxton)ENSG00000152078 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152078 [Gene_View]  chr1:95092517-95197605 [Contig_View]  TMEM56 [Vega]
ICGC DataPortalENSG00000152078
TCGA cBioPortalTMEM56
AceView (NCBI)TMEM56
Genatlas (Paris)TMEM56
WikiGenes148534
SOURCE (Princeton)TMEM56
Genetics Home Reference (NIH)TMEM56
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM56  -     chr1:95092517-95197605 +  1p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM56  -     1p21.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM56 - 1p21.3 [CytoView hg19]  TMEM56 - 1p21.3 [CytoView hg38]
Mapping of homologs : NCBITMEM56 [Mapview hg19]  TMEM56 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056404 AK126344 BC019700 BC108263 BC137457
RefSeq transcript (Entrez)NM_001199679 NM_152487
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM56
Cluster EST : UnigeneHs.483512 [ NCBI ]
CGAP (NCI)Hs.483512
Alternative Splicing GalleryENSG00000152078
Gene ExpressionTMEM56 [ NCBI-GEO ]   TMEM56 [ EBI - ARRAY_EXPRESS ]   TMEM56 [ SEEK ]   TMEM56 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148534
GTEX Portal (Tissue expression)TMEM56
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MV1
Splice isoforms : SwissVarQ96MV1
PhosPhoSitePlusQ96MV1
Domaine pattern : Prosite (Expaxy)TLC (PS50922)   
Domains : Interpro (EBI)TLC-dom   
Domain families : Pfam (Sanger)TRAM_LAG1_CLN8 (PF03798)   
Domain families : Pfam (NCBI)pfam03798   
Domain families : Smart (EMBL)TLC (SM00724)  
Conserved Domain (NCBI)TMEM56
DMDM Disease mutations148534
Blocks (Seattle)TMEM56
SuperfamilyQ96MV1
Human Protein AtlasENSG00000152078
Peptide AtlasQ96MV1
HPRD08110
IPIIPI00043429   IPI00640522   IPI00640061   
Protein Interaction databases
DIP (DOE-UCLA)Q96MV1
IntAct (EBI)Q96MV1
FunCoupENSG00000152078
BioGRIDTMEM56
STRING (EMBL)TMEM56
ZODIACTMEM56
Ontologies - Pathways
QuickGOQ96MV1
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  
NDEx NetworkTMEM56
Atlas of Cancer Signalling NetworkTMEM56
Wikipedia pathwaysTMEM56
Orthology - Evolution
OrthoDB148534
GeneTree (enSembl)ENSG00000152078
Phylogenetic Trees/Animal Genes : TreeFamTMEM56
HOVERGENQ96MV1
HOGENOMQ96MV1
Homologs : HomoloGeneTMEM56
Homology/Alignments : Family Browser (UCSC)TMEM56
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM56
dbVarTMEM56
ClinVarTMEM56
1000_GenomesTMEM56 
Exome Variant ServerTMEM56
ExAC (Exome Aggregation Consortium)TMEM56 (select the gene name)
Genetic variants : HAPMAP148534
Genomic Variants (DGV)TMEM56 [DGVbeta]
DECIPHERTMEM56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM56 
Mutations
ICGC Data PortalTMEM56 
TCGA Data PortalTMEM56 
Broad Tumor PortalTMEM56
OASIS PortalTMEM56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM56  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM56
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM56
DgiDB (Drug Gene Interaction Database)TMEM56
DoCM (Curated mutations)TMEM56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM56 (select a term)
intoGenTMEM56
Cancer3DTMEM56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM56
Genetic Testing Registry TMEM56
NextProtQ96MV1 [Medical]
TSGene148534
GENETestsTMEM56
Target ValidationTMEM56
Huge Navigator TMEM56 [HugePedia]
snp3D : Map Gene to Disease148534
BioCentury BCIQTMEM56
ClinGenTMEM56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148534
Chemical/Pharm GKB GenePA142670772
Clinical trialTMEM56
Miscellaneous
canSAR (ICR)TMEM56 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM56
EVEXTMEM56
GoPubMedTMEM56
iHOPTMEM56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:25 CEST 2017

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