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TMEM59L (transmembrane protein 59 like)

Identity

Alias_namesC19orf4
chromosome 19 open reading frame 4
Alias_symbol (synonym)BSMAP
Other alias
HGNC (Hugo) TMEM59L
LocusID (NCBI) 25789
Atlas_Id 74962
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 18612872 and ends at 18621039 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COPE (19p13.11) / TMEM59L (19p13.11)CRTC1 (19p13.11) / TMEM59L (19p13.11)NOL6 (9p13.3) / TMEM59L (19p13.11)
TMEM59L (19p13.11) / SYNGR1 (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM59L   13237
Cards
Entrez_Gene (NCBI)TMEM59L  25789  transmembrane protein 59 like
AliasesBSMAP; C19orf4
GeneCards (Weizmann)TMEM59L
Ensembl hg19 (Hinxton)ENSG00000105696 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105696 [Gene_View]  chr19:18612872-18621039 [Contig_View]  TMEM59L [Vega]
ICGC DataPortalENSG00000105696
TCGA cBioPortalTMEM59L
AceView (NCBI)TMEM59L
Genatlas (Paris)TMEM59L
WikiGenes25789
SOURCE (Princeton)TMEM59L
Genetics Home Reference (NIH)TMEM59L
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM59L  -     chr19:18612872-18621039 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM59L  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblTMEM59L - 19p13.11 [CytoView hg19]  TMEM59L - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBITMEM59L [Mapview hg19]  TMEM59L [Mapview hg38]
OMIM617096   
Gene and transcription
Genbank (Entrez)AF186264 AK309384 BC010446 BI752768 EU831798
RefSeq transcript (Entrez)NM_012109
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM59L
Cluster EST : UnigeneHs.329850 [ NCBI ]
CGAP (NCI)Hs.329850
Alternative Splicing GalleryENSG00000105696
Gene ExpressionTMEM59L [ NCBI-GEO ]   TMEM59L [ EBI - ARRAY_EXPRESS ]   TMEM59L [ SEEK ]   TMEM59L [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM59L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25789
GTEX Portal (Tissue expression)TMEM59L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK28
Splice isoforms : SwissVarQ9UK28
PhosPhoSitePlusQ9UK28
Domains : Interpro (EBI)Uncharacterised_TMEM59   
Domain families : Pfam (Sanger)BSMAP (PF12280)   
Domain families : Pfam (NCBI)pfam12280   
Conserved Domain (NCBI)TMEM59L
DMDM Disease mutations25789
Blocks (Seattle)TMEM59L
SuperfamilyQ9UK28
Human Protein AtlasENSG00000105696
Peptide AtlasQ9UK28
HPRD12709
IPIIPI00015877   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK28
IntAct (EBI)Q9UK28
FunCoupENSG00000105696
BioGRIDTMEM59L
STRING (EMBL)TMEM59L
ZODIACTMEM59L
Ontologies - Pathways
QuickGOQ9UK28
Ontology : AmiGOGolgi membrane  membrane  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  membrane  integral component of membrane  
NDEx NetworkTMEM59L
Atlas of Cancer Signalling NetworkTMEM59L
Wikipedia pathwaysTMEM59L
Orthology - Evolution
OrthoDB25789
GeneTree (enSembl)ENSG00000105696
Phylogenetic Trees/Animal Genes : TreeFamTMEM59L
HOVERGENQ9UK28
HOGENOMQ9UK28
Homologs : HomoloGeneTMEM59L
Homology/Alignments : Family Browser (UCSC)TMEM59L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM59L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM59L
dbVarTMEM59L
ClinVarTMEM59L
1000_GenomesTMEM59L 
Exome Variant ServerTMEM59L
ExAC (Exome Aggregation Consortium)TMEM59L (select the gene name)
Genetic variants : HAPMAP25789
Genomic Variants (DGV)TMEM59L [DGVbeta]
DECIPHERTMEM59L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM59L 
Mutations
ICGC Data PortalTMEM59L 
TCGA Data PortalTMEM59L 
Broad Tumor PortalTMEM59L
OASIS PortalTMEM59L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM59L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM59L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM59L
DgiDB (Drug Gene Interaction Database)TMEM59L
DoCM (Curated mutations)TMEM59L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM59L (select a term)
intoGenTMEM59L
Cancer3DTMEM59L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617096   
Orphanet
MedgenTMEM59L
Genetic Testing Registry TMEM59L
NextProtQ9UK28 [Medical]
TSGene25789
GENETestsTMEM59L
Target ValidationTMEM59L
Huge Navigator TMEM59L [HugePedia]
snp3D : Map Gene to Disease25789
BioCentury BCIQTMEM59L
ClinGenTMEM59L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25789
Chemical/Pharm GKB GenePA162406615
Clinical trialTMEM59L
Miscellaneous
canSAR (ICR)TMEM59L (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM59L
EVEXTMEM59L
GoPubMedTMEM59L
iHOPTMEM59L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:03 CEST 2017

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