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TMEM59L (transmembrane protein 59 like)

Identity

Alias (NCBI)BSMAP
C19orf4
HGNC (Hugo) TMEM59L
HGNC Alias symbBSMAP
HGNC Previous nameC19orf4
HGNC Previous namechromosome 19 open reading frame 4
LocusID (NCBI) 25789
Atlas_Id 74962
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 18612870 and ends at 18621039 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COPE (19p13.11) / TMEM59L (19p13.11)CRTC1 (19p13.11) / TMEM59L (19p13.11)NOL6 (9p13.3) / TMEM59L (19p13.11)
TMEM59L (19p13.11) / SYNGR1 (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM59L   13237
Cards
Entrez_Gene (NCBI)TMEM59L    transmembrane protein 59 like
AliasesBSMAP; C19orf4
GeneCards (Weizmann)TMEM59L
Ensembl hg19 (Hinxton)ENSG00000105696 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105696 [Gene_View]  ENSG00000105696 [Sequence]  chr19:18612870-18621039 [Contig_View]  TMEM59L [Vega]
ICGC DataPortalENSG00000105696
TCGA cBioPortalTMEM59L
AceView (NCBI)TMEM59L
Genatlas (Paris)TMEM59L
SOURCE (Princeton)TMEM59L
Genetics Home Reference (NIH)TMEM59L
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM59L  -     chr19:18612870-18621039 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM59L  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathTMEM59L - 19p13.11 [CytoView hg19]  TMEM59L - 19p13.11 [CytoView hg38]
ImmunoBaseENSG00000105696
Genome Data Viewer NCBITMEM59L [Mapview hg19]  
OMIM617096   
Gene and transcription
Genbank (Entrez)AF186264 AK308714 AK309384 BC010446 BI752768
RefSeq transcript (Entrez)NM_012109
Consensus coding sequences : CCDS (NCBI)TMEM59L
Gene ExpressionTMEM59L [ NCBI-GEO ]   TMEM59L [ EBI - ARRAY_EXPRESS ]   TMEM59L [ SEEK ]   TMEM59L [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM59L [ Firebrowse - Broad ]
GenevisibleExpression of TMEM59L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25789
GTEX Portal (Tissue expression)TMEM59L
Human Protein AtlasENSG00000105696-TMEM59L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK28
PhosPhoSitePlusQ9UK28
Domains : Interpro (EBI)Uncharacterised_TMEM59   
Domain families : Pfam (Sanger)BSMAP (PF12280)   
Domain families : Pfam (NCBI)pfam12280   
Conserved Domain (NCBI)TMEM59L
SuperfamilyQ9UK28
AlphaFold pdb e-kbQ9UK28   
Human Protein Atlas [tissue]ENSG00000105696-TMEM59L [tissue]
HPRD12709
Protein Interaction databases
DIP (DOE-UCLA)Q9UK28
IntAct (EBI)Q9UK28
BioGRIDTMEM59L
STRING (EMBL)TMEM59L
ZODIACTMEM59L
Ontologies - Pathways
QuickGOQ9UK28
Ontology : AmiGOGolgi membrane  membrane  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  membrane  integral component of membrane  
NDEx NetworkTMEM59L
Atlas of Cancer Signalling NetworkTMEM59L
Wikipedia pathwaysTMEM59L
Orthology - Evolution
OrthoDB25789
GeneTree (enSembl)ENSG00000105696
Phylogenetic Trees/Animal Genes : TreeFamTMEM59L
Homologs : HomoloGeneTMEM59L
Homology/Alignments : Family Browser (UCSC)TMEM59L
Gene fusions - Rearrangements
Fusion : QuiverTMEM59L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM59L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM59L
dbVarTMEM59L
ClinVarTMEM59L
MonarchTMEM59L
1000_GenomesTMEM59L 
Exome Variant ServerTMEM59L
GNOMAD BrowserENSG00000105696
Varsome BrowserTMEM59L
ACMGTMEM59L variants
VarityQ9UK28
Genomic Variants (DGV)TMEM59L [DGVbeta]
DECIPHERTMEM59L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM59L 
Mutations
ICGC Data PortalTMEM59L 
TCGA Data PortalTMEM59L 
Broad Tumor PortalTMEM59L
OASIS PortalTMEM59L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM59L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM59L
Mutations and Diseases : HGMDTMEM59L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM59L
DgiDB (Drug Gene Interaction Database)TMEM59L
DoCM (Curated mutations)TMEM59L
CIViC (Clinical Interpretations of Variants in Cancer)TMEM59L
Cancer3DTMEM59L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617096   
Orphanet
DisGeNETTMEM59L
MedgenTMEM59L
Genetic Testing Registry TMEM59L
NextProtQ9UK28 [Medical]
GENETestsTMEM59L
Target ValidationTMEM59L
Huge Navigator TMEM59L [HugePedia]
ClinGenTMEM59L
Clinical trials, drugs, therapy
MyCancerGenomeTMEM59L
Protein Interactions : CTDTMEM59L
Pharm GKB GenePA162406615
PharosQ9UK28
Clinical trialTMEM59L
Miscellaneous
canSAR (ICR)TMEM59L
HarmonizomeTMEM59L
DataMed IndexTMEM59L
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM59L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:17 CEST 2021

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