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TMEM60 (transmembrane protein 60)

Identity

Alias_namesC7orf35
chromosome 7 open reading frame 35
Alias_symbol (synonym)DC32
Other alias
HGNC (Hugo) TMEM60
LocusID (NCBI) 85025
Atlas_Id 74963
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 77793728 and ends at 77798430 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TMEM60   21754
Cards
Entrez_Gene (NCBI)TMEM60  85025  transmembrane protein 60
AliasesC7orf35; DC32
GeneCards (Weizmann)TMEM60
Ensembl hg19 (Hinxton)ENSG00000135211 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135211 [Gene_View]  ENSG00000135211 [Sequence]  chr7:77793728-77798430 [Contig_View]  TMEM60 [Vega]
ICGC DataPortalENSG00000135211
TCGA cBioPortalTMEM60
AceView (NCBI)TMEM60
Genatlas (Paris)TMEM60
WikiGenes85025
SOURCE (Princeton)TMEM60
Genetics Home Reference (NIH)TMEM60
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM60  -     chr7:77793728-77798430 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM60  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblTMEM60 - 7q11.23 [CytoView hg19]  TMEM60 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBITMEM60 [Mapview hg19]  TMEM60 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF260336 AK095664 BC012192 BC065930 BX117806
RefSeq transcript (Entrez)NM_032936
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM60
Cluster EST : UnigeneHs.587607 [ NCBI ]
CGAP (NCI)Hs.587607
Alternative Splicing GalleryENSG00000135211
Gene ExpressionTMEM60 [ NCBI-GEO ]   TMEM60 [ EBI - ARRAY_EXPRESS ]   TMEM60 [ SEEK ]   TMEM60 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM60 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85025
GTEX Portal (Tissue expression)TMEM60
Human Protein AtlasENSG00000135211-TMEM60 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2L4
Splice isoforms : SwissVarQ9H2L4
PhosPhoSitePlusQ9H2L4
Domains : Interpro (EBI)TM_Fragile-X-F-assoc   
Domain families : Pfam (Sanger)Tmemb_185A (PF10269)   
Domain families : Pfam (NCBI)pfam10269   
Conserved Domain (NCBI)TMEM60
DMDM Disease mutations85025
Blocks (Seattle)TMEM60
SuperfamilyQ9H2L4
Human Protein Atlas [tissue]ENSG00000135211-TMEM60 [tissue]
Peptide AtlasQ9H2L4
HPRD12923
IPIIPI00015099   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2L4
IntAct (EBI)Q9H2L4
FunCoupENSG00000135211
BioGRIDTMEM60
STRING (EMBL)TMEM60
ZODIACTMEM60
Ontologies - Pathways
QuickGOQ9H2L4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM60
Atlas of Cancer Signalling NetworkTMEM60
Wikipedia pathwaysTMEM60
Orthology - Evolution
OrthoDB85025
GeneTree (enSembl)ENSG00000135211
Phylogenetic Trees/Animal Genes : TreeFamTMEM60
HOVERGENQ9H2L4
HOGENOMQ9H2L4
Homologs : HomoloGeneTMEM60
Homology/Alignments : Family Browser (UCSC)TMEM60
Gene fusions - Rearrangements
Fusion : QuiverTMEM60
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM60 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM60
dbVarTMEM60
ClinVarTMEM60
1000_GenomesTMEM60 
Exome Variant ServerTMEM60
ExAC (Exome Aggregation Consortium)ENSG00000135211
GNOMAD BrowserENSG00000135211
Varsome BrowserTMEM60
Genetic variants : HAPMAP85025
Genomic Variants (DGV)TMEM60 [DGVbeta]
DECIPHERTMEM60 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM60 
Mutations
ICGC Data PortalTMEM60 
TCGA Data PortalTMEM60 
Broad Tumor PortalTMEM60
OASIS PortalTMEM60 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM60  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM60
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM60
DgiDB (Drug Gene Interaction Database)TMEM60
DoCM (Curated mutations)TMEM60 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM60 (select a term)
intoGenTMEM60
Cancer3DTMEM60(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM60
MedgenTMEM60
Genetic Testing Registry TMEM60
NextProtQ9H2L4 [Medical]
TSGene85025
GENETestsTMEM60
Target ValidationTMEM60
Huge Navigator TMEM60 [HugePedia]
snp3D : Map Gene to Disease85025
BioCentury BCIQTMEM60
ClinGenTMEM60
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85025
Chemical/Pharm GKB GenePA134910139
Clinical trialTMEM60
Miscellaneous
canSAR (ICR)TMEM60 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM60
EVEXTMEM60
GoPubMedTMEM60
iHOPTMEM60
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:35:51 CEST 2018
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