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TMEM60 (transmembrane protein 60)

Identity

Alias (NCBI)C7orf35
DC32
HGNC (Hugo) TMEM60
HGNC Alias symbDC32
HGNC Previous nameC7orf35
HGNC Previous namechromosome 7 open reading frame 35
LocusID (NCBI) 85025
Atlas_Id 74963
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 77793728 and ends at 77798434 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)TMEM60   21754
Cards
Entrez_Gene (NCBI)TMEM60    transmembrane protein 60
AliasesC7orf35; DC32
GeneCards (Weizmann)TMEM60
Ensembl hg19 (Hinxton)ENSG00000135211 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135211 [Gene_View]  ENSG00000135211 [Sequence]  chr7:77793728-77798434 [Contig_View]  TMEM60 [Vega]
ICGC DataPortalENSG00000135211
TCGA cBioPortalTMEM60
AceView (NCBI)TMEM60
Genatlas (Paris)TMEM60
SOURCE (Princeton)TMEM60
Genetics Home Reference (NIH)TMEM60
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM60  -     chr7:77793728-77798434 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM60  -     7q11.23   [Description]    (hg19-Feb_2009)
GoldenPathTMEM60 - 7q11.23 [CytoView hg19]  TMEM60 - 7q11.23 [CytoView hg38]
ImmunoBaseENSG00000135211
Genome Data Viewer NCBITMEM60 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF260336 AK095664 BC012192 BC065930 BX117806
RefSeq transcript (Entrez)NM_032936
Consensus coding sequences : CCDS (NCBI)TMEM60
Gene ExpressionTMEM60 [ NCBI-GEO ]   TMEM60 [ EBI - ARRAY_EXPRESS ]   TMEM60 [ SEEK ]   TMEM60 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM60 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM60 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85025
GTEX Portal (Tissue expression)TMEM60
Human Protein AtlasENSG00000135211-TMEM60 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2L4
PhosPhoSitePlusQ9H2L4
Domains : Interpro (EBI)TM_Fragile-X-F-assoc   
Domain families : Pfam (Sanger)Tmemb_185A (PF10269)   
Domain families : Pfam (NCBI)pfam10269   
Conserved Domain (NCBI)TMEM60
SuperfamilyQ9H2L4
AlphaFold pdb e-kbQ9H2L4   
Human Protein Atlas [tissue]ENSG00000135211-TMEM60 [tissue]
HPRD12923
Protein Interaction databases
DIP (DOE-UCLA)Q9H2L4
IntAct (EBI)Q9H2L4
BioGRIDTMEM60
STRING (EMBL)TMEM60
ZODIACTMEM60
Ontologies - Pathways
QuickGOQ9H2L4
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM60
Atlas of Cancer Signalling NetworkTMEM60
Wikipedia pathwaysTMEM60
Orthology - Evolution
OrthoDB85025
GeneTree (enSembl)ENSG00000135211
Phylogenetic Trees/Animal Genes : TreeFamTMEM60
Homologs : HomoloGeneTMEM60
Homology/Alignments : Family Browser (UCSC)TMEM60
Gene fusions - Rearrangements
Fusion : QuiverTMEM60
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM60 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM60
dbVarTMEM60
ClinVarTMEM60
MonarchTMEM60
1000_GenomesTMEM60 
Exome Variant ServerTMEM60
GNOMAD BrowserENSG00000135211
Varsome BrowserTMEM60
ACMGTMEM60 variants
VarityQ9H2L4
Genomic Variants (DGV)TMEM60 [DGVbeta]
DECIPHERTMEM60 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM60 
Mutations
ICGC Data PortalTMEM60 
TCGA Data PortalTMEM60 
Broad Tumor PortalTMEM60
OASIS PortalTMEM60 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM60  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM60
Mutations and Diseases : HGMDTMEM60
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM60
DgiDB (Drug Gene Interaction Database)TMEM60
DoCM (Curated mutations)TMEM60
CIViC (Clinical Interpretations of Variants in Cancer)TMEM60
Cancer3DTMEM60
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM60
MedgenTMEM60
Genetic Testing Registry TMEM60
NextProtQ9H2L4 [Medical]
GENETestsTMEM60
Target ValidationTMEM60
Huge Navigator TMEM60 [HugePedia]
ClinGenTMEM60
Clinical trials, drugs, therapy
MyCancerGenomeTMEM60
Protein Interactions : CTDTMEM60
Pharm GKB GenePA134910139
PharosQ9H2L4
Clinical trialTMEM60
Miscellaneous
canSAR (ICR)TMEM60
HarmonizomeTMEM60
DataMed IndexTMEM60
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM60
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:17 CEST 2021
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