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TMEM61 (transmembrane protein 61)

Identity

Other alias-
HGNC (Hugo) TMEM61
LocusID (NCBI) 199964
Atlas_Id 74964
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 55446337 and ends at 55457966 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RNF11 (1p32.3) / TMEM61 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM61   27296
Cards
Entrez_Gene (NCBI)TMEM61  199964  transmembrane protein 61
Aliases
GeneCards (Weizmann)TMEM61
Ensembl hg19 (Hinxton)ENSG00000143001 [Gene_View]  chr1:55446337-55457966 [Contig_View]  TMEM61 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143001 [Gene_View]  chr1:55446337-55457966 [Contig_View]  TMEM61 [Vega]
ICGC DataPortalENSG00000143001
TCGA cBioPortalTMEM61
AceView (NCBI)TMEM61
Genatlas (Paris)TMEM61
WikiGenes199964
SOURCE (Princeton)TMEM61
Genetics Home Reference (NIH)TMEM61
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM61  -     chr1:55446337-55457966 +  1p32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM61  -     1p32.3   [Description]    (hg38-Dec_2013)
EnsemblTMEM61 - 1p32.3 [CytoView hg19]  TMEM61 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBITMEM61 [Mapview hg19]  TMEM61 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA918832 BC029775 BG430102 HQ447929
RefSeq transcript (Entrez)NM_182532
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)TMEM61
Cluster EST : UnigeneHs.663950 [ NCBI ]
CGAP (NCI)Hs.663950
Alternative Splicing GalleryENSG00000143001
Gene ExpressionTMEM61 [ NCBI-GEO ]   TMEM61 [ EBI - ARRAY_EXPRESS ]   TMEM61 [ SEEK ]   TMEM61 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM61 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199964
GTEX Portal (Tissue expression)TMEM61
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0U2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0U2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0U2
Splice isoforms : SwissVarQ8N0U2
PhosPhoSitePlusQ8N0U2
Domains : Interpro (EBI)TMEM61   
Domain families : Pfam (Sanger)TMEM61 (PF15105)   
Domain families : Pfam (NCBI)pfam15105   
Conserved Domain (NCBI)TMEM61
DMDM Disease mutations199964
Blocks (Seattle)TMEM61
SuperfamilyQ8N0U2
Human Protein AtlasENSG00000143001
Peptide AtlasQ8N0U2
HPRD14121
IPIIPI00295646   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0U2
IntAct (EBI)Q8N0U2
FunCoupENSG00000143001
BioGRIDTMEM61
STRING (EMBL)TMEM61
ZODIACTMEM61
Ontologies - Pathways
QuickGOQ8N0U2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM61
Atlas of Cancer Signalling NetworkTMEM61
Wikipedia pathwaysTMEM61
Orthology - Evolution
OrthoDB199964
GeneTree (enSembl)ENSG00000143001
Phylogenetic Trees/Animal Genes : TreeFamTMEM61
HOVERGENQ8N0U2
HOGENOMQ8N0U2
Homologs : HomoloGeneTMEM61
Homology/Alignments : Family Browser (UCSC)TMEM61
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM61 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM61
dbVarTMEM61
ClinVarTMEM61
1000_GenomesTMEM61 
Exome Variant ServerTMEM61
ExAC (Exome Aggregation Consortium)TMEM61 (select the gene name)
Genetic variants : HAPMAP199964
Genomic Variants (DGV)TMEM61 [DGVbeta]
DECIPHER (Syndromes)1:55446337-55457966  ENSG00000143001
CONAN: Copy Number AnalysisTMEM61 
Mutations
ICGC Data PortalTMEM61 
TCGA Data PortalTMEM61 
Broad Tumor PortalTMEM61
OASIS PortalTMEM61 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM61  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM61
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM61
DgiDB (Drug Gene Interaction Database)TMEM61
DoCM (Curated mutations)TMEM61 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM61 (select a term)
intoGenTMEM61
Cancer3DTMEM61(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM61
Genetic Testing Registry TMEM61
NextProtQ8N0U2 [Medical]
TSGene199964
GENETestsTMEM61
Huge Navigator TMEM61 [HugePedia]
snp3D : Map Gene to Disease199964
BioCentury BCIQTMEM61
ClinGenTMEM61
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199964
Chemical/Pharm GKB GenePA142670774
Clinical trialTMEM61
Miscellaneous
canSAR (ICR)TMEM61 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM61
EVEXTMEM61
GoPubMedTMEM61
iHOPTMEM61
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:02 CET 2017

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