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TMEM62 (transmembrane protein 62)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM62
HGNC Alias symbFLJ23375
LocusID (NCBI) 80021
Atlas_Id 74965
Location 15q15.2  [Link to chromosome band 15q15]
Location_base_pair Starts at 43133586 and ends at 43185143 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SPECC1L (22q11.23) / TMEM62 (15q15.2)TCTN2 (12q24.31) / TMEM62 (15q15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM62   26269
Cards
Entrez_Gene (NCBI)TMEM62    transmembrane protein 62
Aliases
GeneCards (Weizmann)TMEM62
Ensembl hg19 (Hinxton)ENSG00000137842 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137842 [Gene_View]  ENSG00000137842 [Sequence]  chr15:43133586-43185143 [Contig_View]  TMEM62 [Vega]
ICGC DataPortalENSG00000137842
TCGA cBioPortalTMEM62
AceView (NCBI)TMEM62
Genatlas (Paris)TMEM62
SOURCE (Princeton)TMEM62
Genetics Home Reference (NIH)TMEM62
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM62  -     chr15:43133586-43185143 +  15q15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM62  -     15q15.2   [Description]    (hg19-Feb_2009)
GoldenPathTMEM62 - 15q15.2 [CytoView hg19]  TMEM62 - 15q15.2 [CytoView hg38]
ImmunoBaseENSG00000137842
Genome Data Viewer NCBITMEM62 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK027028 AK225353 AK309679 BC009981 CR457370
RefSeq transcript (Entrez)NM_001347004 NM_001347005 NM_001347006 NM_001347007 NM_001347008 NM_001347009 NM_001347010 NM_001347011 NM_001347012 NM_001347013 NM_001347014 NM_001347015 NM_001347016 NM_001347017 NM_001347018 NM_001347019 NM_001347020 NM_001347021 NM_001347023 NM_001347024 NM_001347025 NM_001347026 NM_001347027 NM_001347028 NM_001347029 NM_001347030 NM_001347031 NM_001347032 NM_001347033 NM_001347034 NM_024956
Consensus coding sequences : CCDS (NCBI)TMEM62
Gene ExpressionTMEM62 [ NCBI-GEO ]   TMEM62 [ EBI - ARRAY_EXPRESS ]   TMEM62 [ SEEK ]   TMEM62 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM62 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM62 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80021
GTEX Portal (Tissue expression)TMEM62
Human Protein AtlasENSG00000137842-TMEM62 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0P6H9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0P6H9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0P6H9
PhosPhoSitePlusQ0P6H9
Domains : Interpro (EBI)Calcineurin-like_PHP_ApaH    Metallo-depent_PP-like    MPP_TMEM62   
Domain families : Pfam (Sanger)Metallophos (PF00149)   
Domain families : Pfam (NCBI)pfam00149   
Conserved Domain (NCBI)TMEM62
SuperfamilyQ0P6H9
AlphaFold pdb e-kbQ0P6H9   
Human Protein Atlas [tissue]ENSG00000137842-TMEM62 [tissue]
HPRD08669
Protein Interaction databases
DIP (DOE-UCLA)Q0P6H9
IntAct (EBI)Q0P6H9
BioGRIDTMEM62
STRING (EMBL)TMEM62
ZODIACTMEM62
Ontologies - Pathways
QuickGOQ0P6H9
Ontology : AmiGOintegral component of membrane  hydrolase activity  
Ontology : EGO-EBIintegral component of membrane  hydrolase activity  
NDEx NetworkTMEM62
Atlas of Cancer Signalling NetworkTMEM62
Wikipedia pathwaysTMEM62
Orthology - Evolution
OrthoDB80021
GeneTree (enSembl)ENSG00000137842
Phylogenetic Trees/Animal Genes : TreeFamTMEM62
Homologs : HomoloGeneTMEM62
Homology/Alignments : Family Browser (UCSC)TMEM62
Gene fusions - Rearrangements
Fusion : QuiverTMEM62
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM62
dbVarTMEM62
ClinVarTMEM62
MonarchTMEM62
1000_GenomesTMEM62 
Exome Variant ServerTMEM62
GNOMAD BrowserENSG00000137842
Varsome BrowserTMEM62
ACMGTMEM62 variants
VarityQ0P6H9
Genomic Variants (DGV)TMEM62 [DGVbeta]
DECIPHERTMEM62 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM62 
Mutations
ICGC Data PortalTMEM62 
TCGA Data PortalTMEM62 
Broad Tumor PortalTMEM62
OASIS PortalTMEM62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM62  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM62
Mutations and Diseases : HGMDTMEM62
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM62
DgiDB (Drug Gene Interaction Database)TMEM62
DoCM (Curated mutations)TMEM62
CIViC (Clinical Interpretations of Variants in Cancer)TMEM62
Cancer3DTMEM62
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM62
MedgenTMEM62
Genetic Testing Registry TMEM62
NextProtQ0P6H9 [Medical]
GENETestsTMEM62
Target ValidationTMEM62
Huge Navigator TMEM62 [HugePedia]
ClinGenTMEM62
Clinical trials, drugs, therapy
MyCancerGenomeTMEM62
Protein Interactions : CTDTMEM62
Pharm GKB GenePA142670775
PharosQ0P6H9
Clinical trialTMEM62
Miscellaneous
canSAR (ICR)TMEM62
HarmonizomeTMEM62
DataMed IndexTMEM62
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:18 CEST 2021

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