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TMEM62 (transmembrane protein 62)

Identity

Alias_symbol (synonym)FLJ23375
Other alias-
HGNC (Hugo) TMEM62
LocusID (NCBI) 80021
Atlas_Id 74965
Location 15q15.2  [Link to chromosome band 15q15]
Location_base_pair Starts at 43425722 and ends at 43477341 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SPECC1L (22q11.23) / TMEM62 (15q15.2)TCTN2 (12q24.31) / TMEM62 (15q15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM62   26269
Cards
Entrez_Gene (NCBI)TMEM62  80021  transmembrane protein 62
Aliases
GeneCards (Weizmann)TMEM62
Ensembl hg19 (Hinxton)ENSG00000137842 [Gene_View]  chr15:43425722-43477341 [Contig_View]  TMEM62 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137842 [Gene_View]  chr15:43425722-43477341 [Contig_View]  TMEM62 [Vega]
ICGC DataPortalENSG00000137842
TCGA cBioPortalTMEM62
AceView (NCBI)TMEM62
Genatlas (Paris)TMEM62
WikiGenes80021
SOURCE (Princeton)TMEM62
Genetics Home Reference (NIH)TMEM62
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM62  -     chr15:43425722-43477341 +  15q15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM62  -     15q15.2   [Description]    (hg38-Dec_2013)
EnsemblTMEM62 - 15q15.2 [CytoView hg19]  TMEM62 - 15q15.2 [CytoView hg38]
Mapping of homologs : NCBITMEM62 [Mapview hg19]  TMEM62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027028 AK225353 AK309679 BC009981 CR457370
RefSeq transcript (Entrez)NM_024956
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)TMEM62
Cluster EST : UnigeneHs.511175 [ NCBI ]
CGAP (NCI)Hs.511175
Alternative Splicing GalleryENSG00000137842
Gene ExpressionTMEM62 [ NCBI-GEO ]   TMEM62 [ EBI - ARRAY_EXPRESS ]   TMEM62 [ SEEK ]   TMEM62 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80021
GTEX Portal (Tissue expression)TMEM62
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0P6H9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0P6H9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0P6H9
Splice isoforms : SwissVarQ0P6H9
PhosPhoSitePlusQ0P6H9
Domains : Interpro (EBI)Metallo-depent_PP-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM62
DMDM Disease mutations80021
Blocks (Seattle)TMEM62
SuperfamilyQ0P6H9
Human Protein AtlasENSG00000137842
Peptide AtlasQ0P6H9
HPRD08669
IPIIPI00418676   
Protein Interaction databases
DIP (DOE-UCLA)Q0P6H9
IntAct (EBI)Q0P6H9
FunCoupENSG00000137842
BioGRIDTMEM62
STRING (EMBL)TMEM62
ZODIACTMEM62
Ontologies - Pathways
QuickGOQ0P6H9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM62
Atlas of Cancer Signalling NetworkTMEM62
Wikipedia pathwaysTMEM62
Orthology - Evolution
OrthoDB80021
GeneTree (enSembl)ENSG00000137842
Phylogenetic Trees/Animal Genes : TreeFamTMEM62
HOVERGENQ0P6H9
HOGENOMQ0P6H9
Homologs : HomoloGeneTMEM62
Homology/Alignments : Family Browser (UCSC)TMEM62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM62
dbVarTMEM62
ClinVarTMEM62
1000_GenomesTMEM62 
Exome Variant ServerTMEM62
ExAC (Exome Aggregation Consortium)TMEM62 (select the gene name)
Genetic variants : HAPMAP80021
Genomic Variants (DGV)TMEM62 [DGVbeta]
DECIPHER (Syndromes)15:43425722-43477341  ENSG00000137842
CONAN: Copy Number AnalysisTMEM62 
Mutations
ICGC Data PortalTMEM62 
TCGA Data PortalTMEM62 
Broad Tumor PortalTMEM62
OASIS PortalTMEM62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM62
DgiDB (Drug Gene Interaction Database)TMEM62
DoCM (Curated mutations)TMEM62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM62 (select a term)
intoGenTMEM62
Cancer3DTMEM62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM62
Genetic Testing Registry TMEM62
NextProtQ0P6H9 [Medical]
TSGene80021
GENETestsTMEM62
Huge Navigator TMEM62 [HugePedia]
snp3D : Map Gene to Disease80021
BioCentury BCIQTMEM62
ClinGenTMEM62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80021
Chemical/Pharm GKB GenePA142670775
Clinical trialTMEM62
Miscellaneous
canSAR (ICR)TMEM62 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM62
EVEXTMEM62
GoPubMedTMEM62
iHOPTMEM62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:49:02 CET 2017

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