Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM63A (transmembrane protein 63A)

Identity

Alias_namesKIAA0792
KIAA0792
Other alias
HGNC (Hugo) TMEM63A
LocusID (NCBI) 9725
Atlas_Id 54714
Location 1q42.12  [Link to chromosome band 1q42]
Location_base_pair Starts at 225845532 and ends at 225882720 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNP (17q21.2) / TMEM63A (1q42.12)GLTSCR2 (19q13.33) / TMEM63A (1q42.12)TMEM63A (1q42.12) / LYZ (12q15)
TMEM63A (1q42.12) / NRDC (1p32.3)TMEM63A (1q42.12) / PTPN13 (4q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM63A   29118
Cards
Entrez_Gene (NCBI)TMEM63A  9725  transmembrane protein 63A
AliasesKIAA0792
GeneCards (Weizmann)TMEM63A
Ensembl hg19 (Hinxton)ENSG00000196187 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196187 [Gene_View]  chr1:225845532-225882720 [Contig_View]  TMEM63A [Vega]
ICGC DataPortalENSG00000196187
TCGA cBioPortalTMEM63A
AceView (NCBI)TMEM63A
Genatlas (Paris)TMEM63A
WikiGenes9725
SOURCE (Princeton)TMEM63A
Genetics Home Reference (NIH)TMEM63A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM63A  -     chr1:225845532-225882720 -  1q42.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM63A  -     1q42.12   [Description]    (hg19-Feb_2009)
EnsemblTMEM63A - 1q42.12 [CytoView hg19]  TMEM63A - 1q42.12 [CytoView hg38]
Mapping of homologs : NCBITMEM63A [Mapview hg19]  TMEM63A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB007958 AB018335 AK022502 AK222934 AK222944
RefSeq transcript (Entrez)NM_014698
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM63A
Cluster EST : UnigeneHs.119387 [ NCBI ]
CGAP (NCI)Hs.119387
Alternative Splicing GalleryENSG00000196187
Gene ExpressionTMEM63A [ NCBI-GEO ]   TMEM63A [ EBI - ARRAY_EXPRESS ]   TMEM63A [ SEEK ]   TMEM63A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM63A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9725
GTEX Portal (Tissue expression)TMEM63A
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94886   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94886  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94886
Splice isoforms : SwissVarO94886
PhosPhoSitePlusO94886
Domains : Interpro (EBI)Csc1_N    Nucleotide-bd_a/b_plait    PHM7_cyt    RRM_dom    RSN1_7TM    TMEM63A/B   
Domain families : Pfam (Sanger)PHM7_cyt (PF14703)    RSN1_7TM (PF02714)    RSN1_TM (PF13967)   
Domain families : Pfam (NCBI)pfam14703    pfam02714    pfam13967   
Conserved Domain (NCBI)TMEM63A
DMDM Disease mutations9725
Blocks (Seattle)TMEM63A
SuperfamilyO94886
Human Protein AtlasENSG00000196187
Peptide AtlasO94886
HPRD13817
IPIIPI00006006   IPI01011074   IPI00646598   
Protein Interaction databases
DIP (DOE-UCLA)O94886
IntAct (EBI)O94886
FunCoupENSG00000196187
BioGRIDTMEM63A
STRING (EMBL)TMEM63A
ZODIACTMEM63A
Ontologies - Pathways
QuickGOO94886
Ontology : AmiGOnucleic acid binding  lysosome  lysosomal membrane  microtubule organizing center  plasma membrane  ion transport  integral component of membrane  specific granule membrane  intracellular membrane-bounded organelle  neutrophil degranulation  extracellular exosome  tertiary granule membrane  
Ontology : EGO-EBInucleic acid binding  lysosome  lysosomal membrane  microtubule organizing center  plasma membrane  ion transport  integral component of membrane  specific granule membrane  intracellular membrane-bounded organelle  neutrophil degranulation  extracellular exosome  tertiary granule membrane  
NDEx NetworkTMEM63A
Atlas of Cancer Signalling NetworkTMEM63A
Wikipedia pathwaysTMEM63A
Orthology - Evolution
OrthoDB9725
GeneTree (enSembl)ENSG00000196187
Phylogenetic Trees/Animal Genes : TreeFamTMEM63A
HOVERGENO94886
HOGENOMO94886
Homologs : HomoloGeneTMEM63A
Homology/Alignments : Family Browser (UCSC)TMEM63A
Gene fusions - Rearrangements
Fusion : MitelmanTMEM63A/NRD1 [1q42.12/1p32.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM63A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM63A
dbVarTMEM63A
ClinVarTMEM63A
1000_GenomesTMEM63A 
Exome Variant ServerTMEM63A
ExAC (Exome Aggregation Consortium)TMEM63A (select the gene name)
Genetic variants : HAPMAP9725
Genomic Variants (DGV)TMEM63A [DGVbeta]
DECIPHERTMEM63A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM63A 
Mutations
ICGC Data PortalTMEM63A 
TCGA Data PortalTMEM63A 
Broad Tumor PortalTMEM63A
OASIS PortalTMEM63A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM63A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM63A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM63A
DgiDB (Drug Gene Interaction Database)TMEM63A
DoCM (Curated mutations)TMEM63A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM63A (select a term)
intoGenTMEM63A
Cancer3DTMEM63A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM63A
Genetic Testing Registry TMEM63A
NextProtO94886 [Medical]
TSGene9725
GENETestsTMEM63A
Huge Navigator TMEM63A [HugePedia]
snp3D : Map Gene to Disease9725
BioCentury BCIQTMEM63A
ClinGenTMEM63A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9725
Chemical/Pharm GKB GenePA142670776
Clinical trialTMEM63A
Miscellaneous
canSAR (ICR)TMEM63A (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM63A
EVEXTMEM63A
GoPubMedTMEM63A
iHOPTMEM63A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:41:25 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.