Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM63C (transmembrane protein 63C)

Identity

Alias_namesC14orf171
chromosome 14 open reading frame 171
Alias_symbol (synonym)DKFZp434P0111
CSC1
hsCSC1
Other alias
HGNC (Hugo) TMEM63C
LocusID (NCBI) 57156
Atlas_Id 74967
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 77181759 and ends at 77259495 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM63C   23787
Cards
Entrez_Gene (NCBI)TMEM63C  57156  transmembrane protein 63C
AliasesC14orf171; CSC1; hsCSC1
GeneCards (Weizmann)TMEM63C
Ensembl hg19 (Hinxton)ENSG00000165548 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165548 [Gene_View]  chr14:77181759-77259495 [Contig_View]  TMEM63C [Vega]
ICGC DataPortalENSG00000165548
TCGA cBioPortalTMEM63C
AceView (NCBI)TMEM63C
Genatlas (Paris)TMEM63C
WikiGenes57156
SOURCE (Princeton)TMEM63C
Genetics Home Reference (NIH)TMEM63C
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM63C  -     chr14:77181759-77259495 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM63C  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM63C - 14q24.3 [CytoView hg19]  TMEM63C - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBITMEM63C [Mapview hg19]  TMEM63C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124749 AK125159 AL137278 AL157492 AL537279
RefSeq transcript (Entrez)NM_020431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM63C
Cluster EST : UnigeneHs.22452 [ NCBI ]
CGAP (NCI)Hs.22452
Alternative Splicing GalleryENSG00000165548
Gene ExpressionTMEM63C [ NCBI-GEO ]   TMEM63C [ EBI - ARRAY_EXPRESS ]   TMEM63C [ SEEK ]   TMEM63C [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM63C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57156
GTEX Portal (Tissue expression)TMEM63C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1W3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1W3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1W3
Splice isoforms : SwissVarQ9P1W3
PhosPhoSitePlusQ9P1W3
Domains : Interpro (EBI)Csc1_N    PHM7_cyt    RSN1_7TM   
Domain families : Pfam (Sanger)PHM7_cyt (PF14703)    RSN1_7TM (PF02714)    RSN1_TM (PF13967)   
Domain families : Pfam (NCBI)pfam14703    pfam02714    pfam13967   
Conserved Domain (NCBI)TMEM63C
DMDM Disease mutations57156
Blocks (Seattle)TMEM63C
SuperfamilyQ9P1W3
Human Protein AtlasENSG00000165548
Peptide AtlasQ9P1W3
HPRD16617
IPIIPI00067744   IPI01014595   IPI01026330   IPI01026222   IPI01025673   IPI01025567   IPI01025925   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1W3
IntAct (EBI)Q9P1W3
FunCoupENSG00000165548
BioGRIDTMEM63C
STRING (EMBL)TMEM63C
ZODIACTMEM63C
Ontologies - Pathways
QuickGOQ9P1W3
Ontology : AmiGOcalcium activated cation channel activity  cation transport  integral component of membrane  cation transmembrane transport  
Ontology : EGO-EBIcalcium activated cation channel activity  cation transport  integral component of membrane  cation transmembrane transport  
NDEx NetworkTMEM63C
Atlas of Cancer Signalling NetworkTMEM63C
Wikipedia pathwaysTMEM63C
Orthology - Evolution
OrthoDB57156
GeneTree (enSembl)ENSG00000165548
Phylogenetic Trees/Animal Genes : TreeFamTMEM63C
HOVERGENQ9P1W3
HOGENOMQ9P1W3
Homologs : HomoloGeneTMEM63C
Homology/Alignments : Family Browser (UCSC)TMEM63C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM63C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM63C
dbVarTMEM63C
ClinVarTMEM63C
1000_GenomesTMEM63C 
Exome Variant ServerTMEM63C
ExAC (Exome Aggregation Consortium)TMEM63C (select the gene name)
Genetic variants : HAPMAP57156
Genomic Variants (DGV)TMEM63C [DGVbeta]
DECIPHERTMEM63C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM63C 
Mutations
ICGC Data PortalTMEM63C 
TCGA Data PortalTMEM63C 
Broad Tumor PortalTMEM63C
OASIS PortalTMEM63C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM63C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM63C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM63C
DgiDB (Drug Gene Interaction Database)TMEM63C
DoCM (Curated mutations)TMEM63C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM63C (select a term)
intoGenTMEM63C
Cancer3DTMEM63C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM63C
Genetic Testing Registry TMEM63C
NextProtQ9P1W3 [Medical]
TSGene57156
GENETestsTMEM63C
Target ValidationTMEM63C
Huge Navigator TMEM63C [HugePedia]
snp3D : Map Gene to Disease57156
BioCentury BCIQTMEM63C
ClinGenTMEM63C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57156
Chemical/Pharm GKB GenePA134993950
Clinical trialTMEM63C
Miscellaneous
canSAR (ICR)TMEM63C (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM63C
EVEXTMEM63C
GoPubMedTMEM63C
iHOPTMEM63C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:46:27 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.