Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM63C (transmembrane protein 63C)

Identity

Alias (NCBI)C14orf171
CSC1
hsCSC1
HGNC (Hugo) TMEM63C
HGNC Alias symbDKFZp434P0111
CSC1
hsCSC1
HGNC Alias namecalcium permeable stress-gated cation channel 1 homolog (Arabidopsis)
HGNC Previous nameC14orf171
HGNC Previous namechromosome 14 open reading frame 171
LocusID (NCBI) 57156
Atlas_Id 74967
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 77181798 and ends at 77259495 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM63C   23787
Cards
Entrez_Gene (NCBI)TMEM63C    transmembrane protein 63C
AliasesC14orf171; CSC1; hsCSC1
GeneCards (Weizmann)TMEM63C
Ensembl hg19 (Hinxton)ENSG00000165548 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165548 [Gene_View]  ENSG00000165548 [Sequence]  chr14:77181798-77259495 [Contig_View]  TMEM63C [Vega]
ICGC DataPortalENSG00000165548
TCGA cBioPortalTMEM63C
AceView (NCBI)TMEM63C
Genatlas (Paris)TMEM63C
SOURCE (Princeton)TMEM63C
Genetics Home Reference (NIH)TMEM63C
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM63C  -     chr14:77181798-77259495 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM63C  -     14q24.3   [Description]    (hg19-Feb_2009)
GoldenPathTMEM63C - 14q24.3 [CytoView hg19]  TMEM63C - 14q24.3 [CytoView hg38]
ImmunoBaseENSG00000165548
Genome Data Viewer NCBITMEM63C [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK124749 AK125159 AL137278 AL157492 AL537279
RefSeq transcript (Entrez)NM_020431
Consensus coding sequences : CCDS (NCBI)TMEM63C
Gene ExpressionTMEM63C [ NCBI-GEO ]   TMEM63C [ EBI - ARRAY_EXPRESS ]   TMEM63C [ SEEK ]   TMEM63C [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM63C [ Firebrowse - Broad ]
GenevisibleExpression of TMEM63C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57156
GTEX Portal (Tissue expression)TMEM63C
Human Protein AtlasENSG00000165548-TMEM63C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1W3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1W3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1W3
PhosPhoSitePlusQ9P1W3
Domains : Interpro (EBI)Csc1_N    PHM7_cyt    RSN1_7TM   
Domain families : Pfam (Sanger)PHM7_cyt (PF14703)    RSN1_7TM (PF02714)    RSN1_TM (PF13967)   
Domain families : Pfam (NCBI)pfam14703    pfam02714    pfam13967   
Conserved Domain (NCBI)TMEM63C
SuperfamilyQ9P1W3
AlphaFold pdb e-kbQ9P1W3   
Human Protein Atlas [tissue]ENSG00000165548-TMEM63C [tissue]
HPRD16617
Protein Interaction databases
DIP (DOE-UCLA)Q9P1W3
IntAct (EBI)Q9P1W3
BioGRIDTMEM63C
STRING (EMBL)TMEM63C
ZODIACTMEM63C
Ontologies - Pathways
QuickGOQ9P1W3
Ontology : AmiGOglomerular filtration  calcium activated cation channel activity  calcium activated cation channel activity  plasma membrane  plasma membrane  cation transport  integral component of membrane  cation transmembrane transport  osmolarity-sensing cation channel activity  
Ontology : EGO-EBIglomerular filtration  calcium activated cation channel activity  calcium activated cation channel activity  plasma membrane  plasma membrane  cation transport  integral component of membrane  cation transmembrane transport  osmolarity-sensing cation channel activity  
NDEx NetworkTMEM63C
Atlas of Cancer Signalling NetworkTMEM63C
Wikipedia pathwaysTMEM63C
Orthology - Evolution
OrthoDB57156
GeneTree (enSembl)ENSG00000165548
Phylogenetic Trees/Animal Genes : TreeFamTMEM63C
Homologs : HomoloGeneTMEM63C
Homology/Alignments : Family Browser (UCSC)TMEM63C
Gene fusions - Rearrangements
Fusion : QuiverTMEM63C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM63C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM63C
dbVarTMEM63C
ClinVarTMEM63C
MonarchTMEM63C
1000_GenomesTMEM63C 
Exome Variant ServerTMEM63C
GNOMAD BrowserENSG00000165548
Varsome BrowserTMEM63C
ACMGTMEM63C variants
VarityQ9P1W3
Genomic Variants (DGV)TMEM63C [DGVbeta]
DECIPHERTMEM63C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM63C 
Mutations
ICGC Data PortalTMEM63C 
TCGA Data PortalTMEM63C 
Broad Tumor PortalTMEM63C
OASIS PortalTMEM63C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM63C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM63C
Mutations and Diseases : HGMDTMEM63C
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM63C
DgiDB (Drug Gene Interaction Database)TMEM63C
DoCM (Curated mutations)TMEM63C
CIViC (Clinical Interpretations of Variants in Cancer)TMEM63C
Cancer3DTMEM63C
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM63C
MedgenTMEM63C
Genetic Testing Registry TMEM63C
NextProtQ9P1W3 [Medical]
GENETestsTMEM63C
Target ValidationTMEM63C
Huge Navigator TMEM63C [HugePedia]
ClinGenTMEM63C
Clinical trials, drugs, therapy
MyCancerGenomeTMEM63C
Protein Interactions : CTDTMEM63C
Pharm GKB GenePA134993950
PharosQ9P1W3
Clinical trialTMEM63C
Miscellaneous
canSAR (ICR)TMEM63C
HarmonizomeTMEM63C
DataMed IndexTMEM63C
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM63C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:26:18 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.