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TMEM65 (transmembrane protein 65)

Identity

Other alias-
HGNC (Hugo) TMEM65
LocusID (NCBI) 157378
Atlas_Id 74969
Location 8q24.13  [Link to chromosome band 8q24]
Location_base_pair Starts at 124310918 and ends at 124372699 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RB1 (13q14.2) / TMEM65 (8q24.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM65   25203
Cards
Entrez_Gene (NCBI)TMEM65  157378  transmembrane protein 65
Aliases
GeneCards (Weizmann)TMEM65
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:124310918-124372699 [Contig_View]  TMEM65 [Vega]
TCGA cBioPortalTMEM65
AceView (NCBI)TMEM65
Genatlas (Paris)TMEM65
WikiGenes157378
SOURCE (Princeton)TMEM65
Genetics Home Reference (NIH)TMEM65
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM65  -     chr8:124310918-124372699 -  8q24.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM65  -     8q24.13   [Description]    (hg19-Feb_2009)
EnsemblTMEM65 - 8q24.13 [CytoView hg19]  TMEM65 - 8q24.13 [CytoView hg38]
Mapping of homologs : NCBITMEM65 [Mapview hg19]  TMEM65 [Mapview hg38]
OMIM616609   
Gene and transcription
Genbank (Entrez)AW300050 BC017881 BC032396 BC041379 BM679703
RefSeq transcript (Entrez)NM_194291
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM65
Cluster EST : UnigeneHs.187646 [ NCBI ]
CGAP (NCI)Hs.187646
Gene ExpressionTMEM65 [ NCBI-GEO ]   TMEM65 [ EBI - ARRAY_EXPRESS ]   TMEM65 [ SEEK ]   TMEM65 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM65 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157378
GTEX Portal (Tissue expression)TMEM65
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PI78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PI78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PI78
Splice isoforms : SwissVarQ6PI78
PhosPhoSitePlusQ6PI78
Domains : Interpro (EBI)TMEM65   
Domain families : Pfam (Sanger)TMEM65 (PF10507)   
Domain families : Pfam (NCBI)pfam10507   
Conserved Domain (NCBI)TMEM65
DMDM Disease mutations157378
Blocks (Seattle)TMEM65
SuperfamilyQ6PI78
Peptide AtlasQ6PI78
HPRD14102
IPIIPI00375577   
Protein Interaction databases
DIP (DOE-UCLA)Q6PI78
IntAct (EBI)Q6PI78
BioGRIDTMEM65
STRING (EMBL)TMEM65
ZODIACTMEM65
Ontologies - Pathways
QuickGOQ6PI78
Ontology : AmiGOcardiac ventricle development  mitochondrial inner membrane  plasma membrane  intercalated disc  integral component of membrane  regulation of cardiac conduction  
Ontology : EGO-EBIcardiac ventricle development  mitochondrial inner membrane  plasma membrane  intercalated disc  integral component of membrane  regulation of cardiac conduction  
NDEx NetworkTMEM65
Atlas of Cancer Signalling NetworkTMEM65
Wikipedia pathwaysTMEM65
Orthology - Evolution
OrthoDB157378
Phylogenetic Trees/Animal Genes : TreeFamTMEM65
HOVERGENQ6PI78
HOGENOMQ6PI78
Homologs : HomoloGeneTMEM65
Homology/Alignments : Family Browser (UCSC)TMEM65
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM65 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM65
dbVarTMEM65
ClinVarTMEM65
1000_GenomesTMEM65 
Exome Variant ServerTMEM65
ExAC (Exome Aggregation Consortium)TMEM65 (select the gene name)
Genetic variants : HAPMAP157378
Genomic Variants (DGV)TMEM65 [DGVbeta]
DECIPHERTMEM65 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM65 
Mutations
ICGC Data PortalTMEM65 
TCGA Data PortalTMEM65 
Broad Tumor PortalTMEM65
OASIS PortalTMEM65 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM65  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM65
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TMEM65
DgiDB (Drug Gene Interaction Database)TMEM65
DoCM (Curated mutations)TMEM65 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM65 (select a term)
intoGenTMEM65
Cancer3DTMEM65(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616609   
Orphanet
MedgenTMEM65
Genetic Testing Registry TMEM65
NextProtQ6PI78 [Medical]
TSGene157378
GENETestsTMEM65
Target ValidationTMEM65
Huge Navigator TMEM65 [HugePedia]
snp3D : Map Gene to Disease157378
BioCentury BCIQTMEM65
ClinGenTMEM65
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157378
Chemical/Pharm GKB GenePA142670778
Clinical trialTMEM65
Miscellaneous
canSAR (ICR)TMEM65 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM65
EVEXTMEM65
GoPubMedTMEM65
iHOPTMEM65
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:04 CEST 2017

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