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TMEM71 (transmembrane protein 71)

Identity

Alias_symbol (synonym)FLJ33069
Other alias-
HGNC (Hugo) TMEM71
LocusID (NCBI) 137835
Atlas_Id 74973
Location 8q24.22  [Link to chromosome band 8q24]
Location_base_pair Starts at 133722192 and ends at 133772914 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KDM2A (11q13.2) / TMEM71 (8q24.22)MAEA (4p16.3) / TMEM71 (8q24.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM71   26572
Cards
Entrez_Gene (NCBI)TMEM71  137835  transmembrane protein 71
Aliases
GeneCards (Weizmann)TMEM71
Ensembl hg19 (Hinxton)ENSG00000165071 [Gene_View]  chr8:133722192-133772914 [Contig_View]  TMEM71 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165071 [Gene_View]  chr8:133722192-133772914 [Contig_View]  TMEM71 [Vega]
ICGC DataPortalENSG00000165071
TCGA cBioPortalTMEM71
AceView (NCBI)TMEM71
Genatlas (Paris)TMEM71
WikiGenes137835
SOURCE (Princeton)TMEM71
Genetics Home Reference (NIH)TMEM71
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM71  -     chr8:133722192-133772914 -  8q24.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM71  -     8q24.22   [Description]    (hg38-Dec_2013)
EnsemblTMEM71 - 8q24.22 [CytoView hg19]  TMEM71 - 8q24.22 [CytoView hg38]
Mapping of homologs : NCBITMEM71 [Mapview hg19]  TMEM71 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057631 BC022053 BC062592 BC105783 BG505962
RefSeq transcript (Entrez)NM_001145153 NM_144649
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)TMEM71
Cluster EST : UnigeneHs.293842 [ NCBI ]
CGAP (NCI)Hs.293842
Alternative Splicing GalleryENSG00000165071
Gene ExpressionTMEM71 [ NCBI-GEO ]   TMEM71 [ EBI - ARRAY_EXPRESS ]   TMEM71 [ SEEK ]   TMEM71 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)137835
GTEX Portal (Tissue expression)TMEM71
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P5X7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P5X7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P5X7
Splice isoforms : SwissVarQ6P5X7
PhosPhoSitePlusQ6P5X7
Domains : Interpro (EBI)TMEM71   
Domain families : Pfam (Sanger)TMEM71 (PF15121)   
Domain families : Pfam (NCBI)pfam15121   
Conserved Domain (NCBI)TMEM71
DMDM Disease mutations137835
Blocks (Seattle)TMEM71
SuperfamilyQ6P5X7
Human Protein AtlasENSG00000165071
Peptide AtlasQ6P5X7
HPRD08154
IPIIPI00827869   IPI00065392   IPI00654886   IPI00978268   IPI00973763   IPI00976093   IPI00978831   IPI00977538   IPI00976751   
Protein Interaction databases
DIP (DOE-UCLA)Q6P5X7
IntAct (EBI)Q6P5X7
FunCoupENSG00000165071
BioGRIDTMEM71
STRING (EMBL)TMEM71
ZODIACTMEM71
Ontologies - Pathways
QuickGOQ6P5X7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM71
Atlas of Cancer Signalling NetworkTMEM71
Wikipedia pathwaysTMEM71
Orthology - Evolution
OrthoDB137835
GeneTree (enSembl)ENSG00000165071
Phylogenetic Trees/Animal Genes : TreeFamTMEM71
HOVERGENQ6P5X7
HOGENOMQ6P5X7
Homologs : HomoloGeneTMEM71
Homology/Alignments : Family Browser (UCSC)TMEM71
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM71
dbVarTMEM71
ClinVarTMEM71
1000_GenomesTMEM71 
Exome Variant ServerTMEM71
ExAC (Exome Aggregation Consortium)TMEM71 (select the gene name)
Genetic variants : HAPMAP137835
Genomic Variants (DGV)TMEM71 [DGVbeta]
DECIPHER (Syndromes)8:133722192-133772914  ENSG00000165071
CONAN: Copy Number AnalysisTMEM71 
Mutations
ICGC Data PortalTMEM71 
TCGA Data PortalTMEM71 
Broad Tumor PortalTMEM71
OASIS PortalTMEM71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM71
DgiDB (Drug Gene Interaction Database)TMEM71
DoCM (Curated mutations)TMEM71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM71 (select a term)
intoGenTMEM71
Cancer3DTMEM71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM71
Genetic Testing Registry TMEM71
NextProtQ6P5X7 [Medical]
TSGene137835
GENETestsTMEM71
Huge Navigator TMEM71 [HugePedia]
snp3D : Map Gene to Disease137835
BioCentury BCIQTMEM71
ClinGenTMEM71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD137835
Chemical/Pharm GKB GenePA142670784
Clinical trialTMEM71
Miscellaneous
canSAR (ICR)TMEM71 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM71
EVEXTMEM71
GoPubMedTMEM71
iHOPTMEM71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:03 CET 2017

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