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TMEM72 (transmembrane protein 72)

Identity

Alias (NCBI)C10orf127
KSP37
HGNC (Hugo) TMEM72
HGNC Alias symbbA285G1.3
KSP37
HGNC Previous nameC10orf127
HGNC Previous namechromosome 10 open reading frame 127
LocusID (NCBI) 643236
Atlas_Id 74974
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 44911316 and ends at 44937010 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RASSF4 (10q11.21) / TMEM72 (10q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM72   31658
Cards
Entrez_Gene (NCBI)TMEM72    transmembrane protein 72
AliasesC10orf127; KSP37
GeneCards (Weizmann)TMEM72
Ensembl hg19 (Hinxton)ENSG00000187783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187783 [Gene_View]  ENSG00000187783 [Sequence]  chr10:44911316-44937010 [Contig_View]  TMEM72 [Vega]
ICGC DataPortalENSG00000187783
TCGA cBioPortalTMEM72
AceView (NCBI)TMEM72
Genatlas (Paris)TMEM72
SOURCE (Princeton)TMEM72
Genetics Home Reference (NIH)TMEM72
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM72  -     chr10:44911316-44937010 +  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM72  -     10q11.21   [Description]    (hg19-Feb_2009)
GoldenPathTMEM72 - 10q11.21 [CytoView hg19]  TMEM72 - 10q11.21 [CytoView hg38]
ImmunoBaseENSG00000187783
Genome Data Viewer NCBITMEM72 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB235418 BC029135 BC127789 BC127790 BX538120
RefSeq transcript (Entrez)NM_001123376 NM_001345926
Consensus coding sequences : CCDS (NCBI)TMEM72
Gene ExpressionTMEM72 [ NCBI-GEO ]   TMEM72 [ EBI - ARRAY_EXPRESS ]   TMEM72 [ SEEK ]   TMEM72 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM72 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM72 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643236
GTEX Portal (Tissue expression)TMEM72
Human Protein AtlasENSG00000187783-TMEM72 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PK05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PK05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PK05
PhosPhoSitePlusA0PK05
Domains : Interpro (EBI)TMEM72   
Domain families : Pfam (Sanger)TMEM72 (PF16054)   
Domain families : Pfam (NCBI)pfam16054   
Conserved Domain (NCBI)TMEM72
SuperfamilyA0PK05
AlphaFold pdb e-kbA0PK05   
Human Protein Atlas [tissue]ENSG00000187783-TMEM72 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A0PK05
IntAct (EBI)A0PK05
BioGRIDTMEM72
STRING (EMBL)TMEM72
ZODIACTMEM72
Ontologies - Pathways
QuickGOA0PK05
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM72
Atlas of Cancer Signalling NetworkTMEM72
Wikipedia pathwaysTMEM72
Orthology - Evolution
OrthoDB643236
GeneTree (enSembl)ENSG00000187783
Phylogenetic Trees/Animal Genes : TreeFamTMEM72
Homologs : HomoloGeneTMEM72
Homology/Alignments : Family Browser (UCSC)TMEM72
Gene fusions - Rearrangements
Fusion : QuiverTMEM72
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM72
dbVarTMEM72
ClinVarTMEM72
MonarchTMEM72
1000_GenomesTMEM72 
Exome Variant ServerTMEM72
GNOMAD BrowserENSG00000187783
Varsome BrowserTMEM72
ACMGTMEM72 variants
VarityA0PK05
Genomic Variants (DGV)TMEM72 [DGVbeta]
DECIPHERTMEM72 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM72 
Mutations
ICGC Data PortalTMEM72 
TCGA Data PortalTMEM72 
Broad Tumor PortalTMEM72
OASIS PortalTMEM72 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM72
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM72
DgiDB (Drug Gene Interaction Database)TMEM72
DoCM (Curated mutations)TMEM72
CIViC (Clinical Interpretations of Variants in Cancer)TMEM72
Cancer3DTMEM72
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM72
MedgenTMEM72
Genetic Testing Registry TMEM72
NextProtA0PK05 [Medical]
GENETestsTMEM72
Target ValidationTMEM72
Huge Navigator TMEM72 [HugePedia]
ClinGenTMEM72
Clinical trials, drugs, therapy
MyCancerGenomeTMEM72
Protein Interactions : CTDTMEM72
Pharm GKB GenePA164726549
PharosA0PK05
Clinical trialTMEM72
Miscellaneous
canSAR (ICR)TMEM72
HarmonizomeTMEM72
DataMed IndexTMEM72
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:19 CEST 2021

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