Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM72 (transmembrane protein 72)

Identity

Alias_namesC10orf127
chromosome 10 open reading frame 127
Alias_symbol (synonym)bA285G1.3
KSP37
Other alias
HGNC (Hugo) TMEM72
LocusID (NCBI) 643236
Atlas_Id 74974
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 44911316 and ends at 44937010 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RASSF4 (10q11.21) / TMEM72 (10q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM72   31658
Cards
Entrez_Gene (NCBI)TMEM72  643236  transmembrane protein 72
AliasesC10orf127; KSP37
GeneCards (Weizmann)TMEM72
Ensembl hg19 (Hinxton)ENSG00000187783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187783 [Gene_View]  chr10:44911316-44937010 [Contig_View]  TMEM72 [Vega]
ICGC DataPortalENSG00000187783
TCGA cBioPortalTMEM72
AceView (NCBI)TMEM72
Genatlas (Paris)TMEM72
WikiGenes643236
SOURCE (Princeton)TMEM72
Genetics Home Reference (NIH)TMEM72
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM72  -     chr10:44911316-44937010 +  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM72  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblTMEM72 - 10q11.21 [CytoView hg19]  TMEM72 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBITMEM72 [Mapview hg19]  TMEM72 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB235418 BC029135 BC127789 BC127790 BX538120
RefSeq transcript (Entrez)NM_001123376 NM_001345926
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM72
Cluster EST : UnigeneHs.292788 [ NCBI ]
CGAP (NCI)Hs.292788
Alternative Splicing GalleryENSG00000187783
Gene ExpressionTMEM72 [ NCBI-GEO ]   TMEM72 [ EBI - ARRAY_EXPRESS ]   TMEM72 [ SEEK ]   TMEM72 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM72 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643236
GTEX Portal (Tissue expression)TMEM72
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PK05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PK05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PK05
Splice isoforms : SwissVarA0PK05
PhosPhoSitePlusA0PK05
Domains : Interpro (EBI)TMEM72   
Domain families : Pfam (Sanger)TMEM72 (PF16054)   
Domain families : Pfam (NCBI)pfam16054   
Conserved Domain (NCBI)TMEM72
DMDM Disease mutations643236
Blocks (Seattle)TMEM72
SuperfamilyA0PK05
Human Protein AtlasENSG00000187783
Peptide AtlasA0PK05
IPIIPI00783225   IPI00884963   
Protein Interaction databases
DIP (DOE-UCLA)A0PK05
IntAct (EBI)A0PK05
FunCoupENSG00000187783
BioGRIDTMEM72
STRING (EMBL)TMEM72
ZODIACTMEM72
Ontologies - Pathways
QuickGOA0PK05
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM72
Atlas of Cancer Signalling NetworkTMEM72
Wikipedia pathwaysTMEM72
Orthology - Evolution
OrthoDB643236
GeneTree (enSembl)ENSG00000187783
Phylogenetic Trees/Animal Genes : TreeFamTMEM72
HOVERGENA0PK05
HOGENOMA0PK05
Homologs : HomoloGeneTMEM72
Homology/Alignments : Family Browser (UCSC)TMEM72
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM72
dbVarTMEM72
ClinVarTMEM72
1000_GenomesTMEM72 
Exome Variant ServerTMEM72
ExAC (Exome Aggregation Consortium)TMEM72 (select the gene name)
Genetic variants : HAPMAP643236
Genomic Variants (DGV)TMEM72 [DGVbeta]
DECIPHERTMEM72 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM72 
Mutations
ICGC Data PortalTMEM72 
TCGA Data PortalTMEM72 
Broad Tumor PortalTMEM72
OASIS PortalTMEM72 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM72  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM72
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM72
DgiDB (Drug Gene Interaction Database)TMEM72
DoCM (Curated mutations)TMEM72 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM72 (select a term)
intoGenTMEM72
Cancer3DTMEM72(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM72
Genetic Testing Registry TMEM72
NextProtA0PK05 [Medical]
TSGene643236
GENETestsTMEM72
Huge Navigator TMEM72 [HugePedia]
snp3D : Map Gene to Disease643236
BioCentury BCIQTMEM72
ClinGenTMEM72
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643236
Chemical/Pharm GKB GenePA164726549
Clinical trialTMEM72
Miscellaneous
canSAR (ICR)TMEM72 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM72
EVEXTMEM72
GoPubMedTMEM72
iHOPTMEM72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:58:58 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.