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TMEM78 (transmembrane protein 78)

Identity

Alias_symbol (synonym)FLJ40168
Other alias-
HGNC (Hugo) TMEM78
LocusID (NCBI) 677790
Atlas_Id 74978
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 229249636 and ends at 229251810 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TMEM78   32307
Cards
Entrez_Gene (NCBI)TMEM78  677790  transmembrane protein 78
Aliases
GeneCards (Weizmann)TMEM78
Ensembl hg19 (Hinxton)ENSG00000177800 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177800 [Gene_View]  chr1:229249636-229251810 [Contig_View]  TMEM78 [Vega]
ICGC DataPortalENSG00000177800
TCGA cBioPortalTMEM78
AceView (NCBI)TMEM78
Genatlas (Paris)TMEM78
WikiGenes677790
SOURCE (Princeton)TMEM78
Genetics Home Reference (NIH)TMEM78
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM78  -     chr1:229249636-229251810 +  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM78  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblTMEM78 - 1q42.13 [CytoView hg19]  TMEM78 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBITMEM78 [Mapview hg19]  TMEM78 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097487
RefSeq transcript (Entrez)NM_001040079
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM78
Cluster EST : UnigeneHs.638407 [ NCBI ]
CGAP (NCI)Hs.638407
Alternative Splicing GalleryENSG00000177800
Gene ExpressionTMEM78 [ NCBI-GEO ]   TMEM78 [ EBI - ARRAY_EXPRESS ]   TMEM78 [ SEEK ]   TMEM78 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM78 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)677790
GTEX Portal (Tissue expression)TMEM78
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7P6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7P6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7P6
Splice isoforms : SwissVarQ5T7P6
PhosPhoSitePlusQ5T7P6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM78
DMDM Disease mutations677790
Blocks (Seattle)TMEM78
SuperfamilyQ5T7P6
Human Protein AtlasENSG00000177800
Peptide AtlasQ5T7P6
IPIIPI00297875   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7P6
IntAct (EBI)Q5T7P6
FunCoupENSG00000177800
BioGRIDTMEM78
STRING (EMBL)TMEM78
ZODIACTMEM78
Ontologies - Pathways
QuickGOQ5T7P6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM78
Atlas of Cancer Signalling NetworkTMEM78
Wikipedia pathwaysTMEM78
Orthology - Evolution
OrthoDB677790
GeneTree (enSembl)ENSG00000177800
Phylogenetic Trees/Animal Genes : TreeFamTMEM78
HOVERGENQ5T7P6
HOGENOMQ5T7P6
Homologs : HomoloGeneTMEM78
Homology/Alignments : Family Browser (UCSC)TMEM78
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM78 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM78
dbVarTMEM78
ClinVarTMEM78
1000_GenomesTMEM78 
Exome Variant ServerTMEM78
ExAC (Exome Aggregation Consortium)TMEM78 (select the gene name)
Genetic variants : HAPMAP677790
Genomic Variants (DGV)TMEM78 [DGVbeta]
DECIPHERTMEM78 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM78 
Mutations
ICGC Data PortalTMEM78 
TCGA Data PortalTMEM78 
Broad Tumor PortalTMEM78
OASIS PortalTMEM78 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM78  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM78
BioMutasearch TMEM78
DgiDB (Drug Gene Interaction Database)TMEM78
DoCM (Curated mutations)TMEM78 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM78 (select a term)
intoGenTMEM78
Cancer3DTMEM78(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM78
Genetic Testing Registry TMEM78
NextProtQ5T7P6 [Medical]
TSGene677790
GENETestsTMEM78
Huge Navigator TMEM78 [HugePedia]
snp3D : Map Gene to Disease677790
BioCentury BCIQTMEM78
ClinGenTMEM78
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677790
Chemical/Pharm GKB GenePA142670733
Clinical trialTMEM78
Miscellaneous
canSAR (ICR)TMEM78 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM78
EVEXTMEM78
GoPubMedTMEM78
iHOPTMEM78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:58:59 CEST 2017

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