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TMEM79 (transmembrane protein 79)

Identity

Alias_symbol (synonym)MGC13102
FLJ16057
FLJ32254
MATT
Other alias
HGNC (Hugo) TMEM79
LocusID (NCBI) 84283
Atlas_Id 55792
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156284279 and ends at 156292443 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM79 (1q22) / LOC729609 (Xp22.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM79   28196
Cards
Entrez_Gene (NCBI)TMEM79  84283  transmembrane protein 79
AliasesMATT
GeneCards (Weizmann)TMEM79
Ensembl hg19 (Hinxton)ENSG00000163472 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163472 [Gene_View]  chr1:156284279-156292443 [Contig_View]  TMEM79 [Vega]
ICGC DataPortalENSG00000163472
TCGA cBioPortalTMEM79
AceView (NCBI)TMEM79
Genatlas (Paris)TMEM79
WikiGenes84283
SOURCE (Princeton)TMEM79
Genetics Home Reference (NIH)TMEM79
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM79  -     chr1:156284279-156292443 +  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM79  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblTMEM79 - 1q22 [CytoView hg19]  TMEM79 - 1q22 [CytoView hg38]
Mapping of homologs : NCBITMEM79 [Mapview hg19]  TMEM79 [Mapview hg38]
OMIM615531   
Gene and transcription
Genbank (Entrez)AK056816 AK122634 AK315767 BC005094 BF448444
RefSeq transcript (Entrez)NM_032323
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM79
Cluster EST : UnigeneHs.347408 [ NCBI ]
CGAP (NCI)Hs.347408
Alternative Splicing GalleryENSG00000163472
Gene ExpressionTMEM79 [ NCBI-GEO ]   TMEM79 [ EBI - ARRAY_EXPRESS ]   TMEM79 [ SEEK ]   TMEM79 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM79 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84283
GTEX Portal (Tissue expression)TMEM79
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSE2
Splice isoforms : SwissVarQ9BSE2
PhosPhoSitePlusQ9BSE2
Domains : Interpro (EBI)MAPEG-like_dom    TMEM79   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM79
DMDM Disease mutations84283
Blocks (Seattle)TMEM79
SuperfamilyQ9BSE2
Human Protein AtlasENSG00000163472
Peptide AtlasQ9BSE2
HPRD17481
IPIIPI00031143   IPI00307793   IPI00514683   IPI00645287   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSE2
IntAct (EBI)Q9BSE2
FunCoupENSG00000163472
BioGRIDTMEM79
STRING (EMBL)TMEM79
ZODIACTMEM79
Ontologies - Pathways
QuickGOQ9BSE2
Ontology : AmiGOepithelial cell maturation  protein binding  lysosome  lysosomal membrane  integral component of membrane  hair follicle morphogenesis  trans-Golgi network membrane  cuticle development  identical protein binding  regulated exocytosis  positive regulation of epidermis development  establishment of skin barrier  cornification  
Ontology : EGO-EBIepithelial cell maturation  protein binding  lysosome  lysosomal membrane  integral component of membrane  hair follicle morphogenesis  trans-Golgi network membrane  cuticle development  identical protein binding  regulated exocytosis  positive regulation of epidermis development  establishment of skin barrier  cornification  
NDEx NetworkTMEM79
Atlas of Cancer Signalling NetworkTMEM79
Wikipedia pathwaysTMEM79
Orthology - Evolution
OrthoDB84283
GeneTree (enSembl)ENSG00000163472
Phylogenetic Trees/Animal Genes : TreeFamTMEM79
HOVERGENQ9BSE2
HOGENOMQ9BSE2
Homologs : HomoloGeneTMEM79
Homology/Alignments : Family Browser (UCSC)TMEM79
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM79 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM79
dbVarTMEM79
ClinVarTMEM79
1000_GenomesTMEM79 
Exome Variant ServerTMEM79
ExAC (Exome Aggregation Consortium)TMEM79 (select the gene name)
Genetic variants : HAPMAP84283
Genomic Variants (DGV)TMEM79 [DGVbeta]
DECIPHERTMEM79 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM79 
Mutations
ICGC Data PortalTMEM79 
TCGA Data PortalTMEM79 
Broad Tumor PortalTMEM79
OASIS PortalTMEM79 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM79  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM79
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM79
DgiDB (Drug Gene Interaction Database)TMEM79
DoCM (Curated mutations)TMEM79 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM79 (select a term)
intoGenTMEM79
Cancer3DTMEM79(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615531   
Orphanet
MedgenTMEM79
Genetic Testing Registry TMEM79
NextProtQ9BSE2 [Medical]
TSGene84283
GENETestsTMEM79
Target ValidationTMEM79
Huge Navigator TMEM79 [HugePedia]
snp3D : Map Gene to Disease84283
BioCentury BCIQTMEM79
ClinGenTMEM79
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84283
Chemical/Pharm GKB GenePA143485632
Clinical trialTMEM79
Miscellaneous
canSAR (ICR)TMEM79 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM79
EVEXTMEM79
GoPubMedTMEM79
iHOPTMEM79
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:59:49 CEST 2017

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