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TMEM80 (transmembrane protein 80)

Identity

Alias_symbol (synonym)FLJ38216
Other alias-
HGNC (Hugo) TMEM80
LocusID (NCBI) 283232
Atlas_Id 74980
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 695591 and ends at 704131 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AP2A2 (11p15.5) / TMEM80 (11p15.5)TMEM80 (11p15.5) / TMEM80 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM80   27453
Cards
Entrez_Gene (NCBI)TMEM80  283232  transmembrane protein 80
Aliases
GeneCards (Weizmann)TMEM80
Ensembl hg19 (Hinxton)ENSG00000177042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177042 [Gene_View]  chr11:695591-704131 [Contig_View]  TMEM80 [Vega]
ICGC DataPortalENSG00000177042
TCGA cBioPortalTMEM80
AceView (NCBI)TMEM80
Genatlas (Paris)TMEM80
WikiGenes283232
SOURCE (Princeton)TMEM80
Genetics Home Reference (NIH)TMEM80
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM80  -     chr11:695591-704131 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM80  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblTMEM80 - 11p15.5 [CytoView hg19]  TMEM80 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBITMEM80 [Mapview hg19]  TMEM80 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI739035 AK124309 AK302585 BC008671 BC038383
RefSeq transcript (Entrez)NM_001042463 NM_001042464 NM_001276253 NM_001276274 NM_174940
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM80
Cluster EST : UnigeneHs.448664 [ NCBI ]
CGAP (NCI)Hs.448664
Alternative Splicing GalleryENSG00000177042
Gene ExpressionTMEM80 [ NCBI-GEO ]   TMEM80 [ EBI - ARRAY_EXPRESS ]   TMEM80 [ SEEK ]   TMEM80 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM80 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283232
GTEX Portal (Tissue expression)TMEM80
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HE8
Splice isoforms : SwissVarQ96HE8
PhosPhoSitePlusQ96HE8
Domains : Interpro (EBI)Uncharacterised_TM-17   
Domain families : Pfam (Sanger)Transmemb_17 (PF09799)   
Domain families : Pfam (NCBI)pfam09799   
Conserved Domain (NCBI)TMEM80
DMDM Disease mutations283232
Blocks (Seattle)TMEM80
SuperfamilyQ96HE8
Human Protein AtlasENSG00000177042
Peptide AtlasQ96HE8
HPRD14143
IPIIPI00784494   IPI00943210   IPI00914015   IPI00977282   
Protein Interaction databases
DIP (DOE-UCLA)Q96HE8
IntAct (EBI)Q96HE8
FunCoupENSG00000177042
BioGRIDTMEM80
STRING (EMBL)TMEM80
ZODIACTMEM80
Ontologies - Pathways
QuickGOQ96HE8
Ontology : AmiGOcilium  integral component of membrane  
Ontology : EGO-EBIcilium  integral component of membrane  
NDEx NetworkTMEM80
Atlas of Cancer Signalling NetworkTMEM80
Wikipedia pathwaysTMEM80
Orthology - Evolution
OrthoDB283232
GeneTree (enSembl)ENSG00000177042
Phylogenetic Trees/Animal Genes : TreeFamTMEM80
HOVERGENQ96HE8
HOGENOMQ96HE8
Homologs : HomoloGeneTMEM80
Homology/Alignments : Family Browser (UCSC)TMEM80
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM80 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM80
dbVarTMEM80
ClinVarTMEM80
1000_GenomesTMEM80 
Exome Variant ServerTMEM80
ExAC (Exome Aggregation Consortium)TMEM80 (select the gene name)
Genetic variants : HAPMAP283232
Genomic Variants (DGV)TMEM80 [DGVbeta]
DECIPHERTMEM80 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM80 
Mutations
ICGC Data PortalTMEM80 
TCGA Data PortalTMEM80 
Broad Tumor PortalTMEM80
OASIS PortalTMEM80 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM80  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM80
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM80
DgiDB (Drug Gene Interaction Database)TMEM80
DoCM (Curated mutations)TMEM80 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM80 (select a term)
intoGenTMEM80
Cancer3DTMEM80(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM80
Genetic Testing Registry TMEM80
NextProtQ96HE8 [Medical]
TSGene283232
GENETestsTMEM80
Target ValidationTMEM80
Huge Navigator TMEM80 [HugePedia]
snp3D : Map Gene to Disease283232
BioCentury BCIQTMEM80
ClinGenTMEM80
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283232
Chemical/Pharm GKB GenePA142670734
Clinical trialTMEM80
Miscellaneous
canSAR (ICR)TMEM80 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM80
EVEXTMEM80
GoPubMedTMEM80
iHOPTMEM80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:29 CEST 2017

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