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TMEM80 (transmembrane protein 80)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM80
HGNC Alias symbFLJ38216
LocusID (NCBI) 283232
Atlas_Id 74980
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 695591 and ends at 704131 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AP2A2 (11p15.5) / TMEM80 (11p15.5)TMEM80 (11p15.5) / TMEM80 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM80   27453
Cards
Entrez_Gene (NCBI)TMEM80    transmembrane protein 80
Aliases
GeneCards (Weizmann)TMEM80
Ensembl hg19 (Hinxton)ENSG00000177042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177042 [Gene_View]  ENSG00000177042 [Sequence]  chr11:695591-704131 [Contig_View]  TMEM80 [Vega]
ICGC DataPortalENSG00000177042
TCGA cBioPortalTMEM80
AceView (NCBI)TMEM80
Genatlas (Paris)TMEM80
SOURCE (Princeton)TMEM80
Genetics Home Reference (NIH)TMEM80
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM80  -     chr11:695591-704131 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM80  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathTMEM80 - 11p15.5 [CytoView hg19]  TMEM80 - 11p15.5 [CytoView hg38]
ImmunoBaseENSG00000177042
Genome Data Viewer NCBITMEM80 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI739035 AK124309 AK302585 BC008671 BC038383
RefSeq transcript (Entrez)NM_001042463 NM_001042464 NM_001276253 NM_001276274 NM_001384408 NM_174940
Consensus coding sequences : CCDS (NCBI)TMEM80
Gene ExpressionTMEM80 [ NCBI-GEO ]   TMEM80 [ EBI - ARRAY_EXPRESS ]   TMEM80 [ SEEK ]   TMEM80 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM80 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM80 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283232
GTEX Portal (Tissue expression)TMEM80
Human Protein AtlasENSG00000177042-TMEM80 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HE8
PhosPhoSitePlusQ96HE8
Domains : Interpro (EBI)Uncharacterised_TM-17   
Domain families : Pfam (Sanger)Transmemb_17 (PF09799)   
Domain families : Pfam (NCBI)pfam09799   
Conserved Domain (NCBI)TMEM80
SuperfamilyQ96HE8
AlphaFold pdb e-kbQ96HE8   
Human Protein Atlas [tissue]ENSG00000177042-TMEM80 [tissue]
HPRD14143
Protein Interaction databases
DIP (DOE-UCLA)Q96HE8
IntAct (EBI)Q96HE8
BioGRIDTMEM80
STRING (EMBL)TMEM80
ZODIACTMEM80
Ontologies - Pathways
QuickGOQ96HE8
Ontology : AmiGOprotein binding  integral component of membrane  ciliary transition zone  non-motile cilium assembly  
Ontology : EGO-EBIprotein binding  integral component of membrane  ciliary transition zone  non-motile cilium assembly  
NDEx NetworkTMEM80
Atlas of Cancer Signalling NetworkTMEM80
Wikipedia pathwaysTMEM80
Orthology - Evolution
OrthoDB283232
GeneTree (enSembl)ENSG00000177042
Phylogenetic Trees/Animal Genes : TreeFamTMEM80
Homologs : HomoloGeneTMEM80
Homology/Alignments : Family Browser (UCSC)TMEM80
Gene fusions - Rearrangements
Fusion : QuiverTMEM80
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM80 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM80
dbVarTMEM80
ClinVarTMEM80
MonarchTMEM80
1000_GenomesTMEM80 
Exome Variant ServerTMEM80
GNOMAD BrowserENSG00000177042
Varsome BrowserTMEM80
ACMGTMEM80 variants
VarityQ96HE8
Genomic Variants (DGV)TMEM80 [DGVbeta]
DECIPHERTMEM80 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM80 
Mutations
ICGC Data PortalTMEM80 
TCGA Data PortalTMEM80 
Broad Tumor PortalTMEM80
OASIS PortalTMEM80 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM80  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM80
Mutations and Diseases : HGMDTMEM80
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM80
DgiDB (Drug Gene Interaction Database)TMEM80
DoCM (Curated mutations)TMEM80
CIViC (Clinical Interpretations of Variants in Cancer)TMEM80
Cancer3DTMEM80
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM80
MedgenTMEM80
Genetic Testing Registry TMEM80
NextProtQ96HE8 [Medical]
GENETestsTMEM80
Target ValidationTMEM80
Huge Navigator TMEM80 [HugePedia]
ClinGenTMEM80
Clinical trials, drugs, therapy
MyCancerGenomeTMEM80
Protein Interactions : CTDTMEM80
Pharm GKB GenePA142670734
PharosQ96HE8
Clinical trialTMEM80
Miscellaneous
canSAR (ICR)TMEM80
HarmonizomeTMEM80
DataMed IndexTMEM80
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:20 CEST 2021

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